Gene Dfer_0889 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_0889 
Symbol 
ID8224458 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp1049091 
End bp1049744 
Gene Length654 bp 
Protein Length217 aa 
Translation table11 
GC content43% 
IMG OID644928754 
Productputative transcriptional regulator, Crp/Fnr family 
Protein accessionYP_003085308 
Protein GI255034687 
COG category[T] Signal transduction mechanisms 
COG ID[COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.00205469 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.913069 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGACT CTAAACCTCT TACGTTGCTT TTCGACGCTT TACAATCGGA GGCTTTCGCC 
GATTTGAAGC AGGAATTTTC TTCACTGACT AGTCCTTATC GAGTTAGAAA GGGGCGTATT
CTTGTGGATG TCGGACAAAT AAACGATCAC ATTTACTTTA TTCATTCCGG AGTTATACGC
ACCTACTATC ACATCGGAGG GGAGGACGTG ACATCCCGTT TGGTCGCCGA TGGTGATATG
GCATGCGTCG CAGAAAGCTT TTTTCTGAGG CAGAAATCTT ATGAAGCAAT CGAGACGTTA
GAGGACTGTT TGATTTATTC AGTTTCATAT GCGGAGTATA AAATGTTAGC GGAAAGACAT
GTTTTGATTT CCAATTTGAT AGTGAGAATA TTGGAGCAAC GGTTGGTCAA CTTTAGTGAA
CGTATTAAAT TGTTTAAGTC TCTGACGGTC GAAAAGCGCA TCGAATCATA CCTAGGTCAG
CCCAATTCAT TGTTCCGCCG TATCCCAGAT CACTATATCG CATCTTACCT TGGGACAACT
CCCGCAACAT TCAGCCGCTG CCTGAAACTG TTGTTACGGG ATAAGCCATC TCAGTTGCCT
GTATTGACGG TCAATACGAT AATTAACATC TTGGCTGGTG ACCTCCTGCT TTGA
 
Protein sequence
MKDSKPLTLL FDALQSEAFA DLKQEFSSLT SPYRVRKGRI LVDVGQINDH IYFIHSGVIR 
TYYHIGGEDV TSRLVADGDM ACVAESFFLR QKSYEAIETL EDCLIYSVSY AEYKMLAERH
VLISNLIVRI LEQRLVNFSE RIKLFKSLTV EKRIESYLGQ PNSLFRRIPD HYIASYLGTT
PATFSRCLKL LLRDKPSQLP VLTVNTIINI LAGDLLL