| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_0838 |
|---|
| Symbol | |
|---|
| ID | 8224407 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 998423 |
|---|
| End bp | 1000957 |
|---|
| Gene Length | 2535 bp |
|---|
| Protein Length | 844 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 644928706 |
|---|
| Product | excinuclease ABC, A subunit |
|---|
| Protein accession | YP_003085260 |
|---|
| Protein GI | 255034639 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0178] Excinuclease ATPase subunit |
|---|
| TIGRFAM ID | [TIGR00630] excinuclease ABC, A subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.503748 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.281681 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCAATT TTCACACTGC TATCATGTCA AAAAAATTAG AATCTCTTCC TGTCTCCGAT
TTTGTCAAAG TACGGGGGGC CAAGGAGCAT AACCTGAAAA ATGTGGATCT GGAAATTCCC
AGAGGTGCGC TGGTCGTTTT TACGGGCATC TCGGGTTCTG GCAAATCGTC ACTGGCCTTC
GGGACATTGT ATGCCGAAGC CCAGCGTCGT TACCTGGAAT CGGTTTCTCC GTATGCGAGG
CGGCTTTTTA ATCAAATGTC CATTCCGCAG GTCGATAGTA TCGACGGTCT TCCGCCAGCT
GTCGCTTTGC AGCAGCAGCG GGGAGCGACC AGCACACGCT CCTCGGTAGG CAGCGTCACC
ACGATTTCCA ACCTGATCAG GATGCTCTAT TCGAGGGCGG GAGATTATCC TGCGGGTCAG
TCCATTGTAT ATGCGGAATC GTTTTCACCC AACACGCCGG AAGGCGCTTG TCCGGAATGC
CATGGCCTGG GGGTTGTGTA CGAGGTAACC GAGCGTTCAA TGGTGCCCGA TGACTCGCTC
TCCATTCGGG AAAAAGCCAT TGCAGCATGG CCAACCGCCT GGCAGGGGCA GAATTTGCGG
GAAATATTGA TGACGCTTGG GTACGACGTG GACATACCCT GGCGTGATCT GCCCAAGAAA
GACAGGGACT GGATCCTGTT TACGGAAGAG CAGCCGGTTG TCCCCGTTTA TTCCGGACTG
AATGCGGAAC AGGTTCAGCG CGCCTTGGCG CGAAAAATGG AGCCCAGCTA TATGGGCACC
TTTACCGGCG CCAAACGGTA TGTGATGCAA ACATTTGCCA ATTCACCCAG CCAGGCGATG
AAAAAGCGTG TGTCCAGATT CATGCTGAGC GCGCCATGTC CCGTATGTCA TGGAAAACGC
CTACGTCCTG AGCCATTATC GGTGAAATTT GCCGGGATGG ATATTGCCGA ATTTTATCAG
CTGAATATCC AGCGTTTACA TGAAATCATA TCTTCATCCC TGAACCTAAA AAATGACCGC
TTAAATAGGG AACATCCTGA AAAGGCATTG GTACTTCTAC GCATTGGTCA TGACCTATTA
TCCCGCCTGG ATGTACTGAT CGATCTGGGT CTTGGGTACC TGACCCTCGA AAGAAGCACC
CCCACGCTCT CGCCGGGCGA ATTGCAGCGC CTGCGGCTGG GGACGCAGAT ACATTCCAAT
CTTTTTGGTG TGGTATATGT ACTCGATGAG CCGTCGGCAG GTCTTCATCC TGCCGATACG
CAATCCTTAC TCCGGGCGCT GGACCGGTTG AAAGCAGCCG GCAATTCGCT TTTTGTCGTC
GAGCATGAAA TCGAAATCAT CCGCCACGCC GACTGGGTGG TCGATGTGGG GCCGGGCGCG
GGTGAAAAGG GCGGAGAGAT ACTGTATAGC GGTCCATTGC AGGGACTGGA AAAAGTGCAC
AGATCCGTGA CAAGGCGCTA TTTGTTTGAT GCAGATCGAA ATCAAAAGCC TGCAAGAGAG
GCGAAAGGAT GGCTGCGGCT AAGGGACGTA AGCCGGAATA ATTTGAAGCA TGTGGATGCC
GACTTCCCAT TAGGCGTGTT GACGAGCGTC ACCGGCATTT CAGGCTCGGG AAAGAGCAGC
CTGGTAAGTC AGGCGCTTGC AGAGTTGGTT TTGGAAAAAT TAGGCCAGCA AATTCCGGTG
ATTGAAGATC GGGAGGACAT TTTACTTCAA GAAGAGGATA TAAAAACAAC TAGTGGATAC
ATTTCCGAAG ACGCAAATCA AATCCGCAGG CTGATACAGG TAGACCAGAA ACCTATCGGC
CGTACGCCCC GGTCAAACTT GGCTACCTAC ACAGGTCTTT TTGATAATGT TCGAAAATTA
TTTGCCAGTA CTAAAATGGC AAAGAGCCGC AAATACGACG CTGGCCGGTT TTCTTTTAAT
GTGGCAAAAG GACGCTGCCA GAACTGTGAA GGCGAAGGCT TTGTGATGGT CGAACTTTTA
TTTCTTCCCA GTGTGTACAC GCCCTGCCCG GTATGCCACG GAAGTCGCCA CAATGAGAAG
ACGCTGGAAG TTACCTACCA TGACAAAAAC ATTGCCGAGG TACTTGCGAT GACTGTGGAT
GAGGCATTTG AGTTTTTTGC GTCCGAACCC CCAATCAGCC GGGCGCTGGA TGTGGTCCGT
CAGGTTGGTT TGGGATATTT GCGTCTGGGG CAACCGGCTA CCGAGCTTTC GGGCGGCGAG
GCACAGCGCA TCAAGCTGGC CACCGAGCTG CAACGGGCCC AGCATGGCAA TACATTATAC
ATTCTGGACG AGCCGACAAC AGGATTGCAT CCATCCGATG TGGACAATTT ACTGGTCCAG
CTCAATAAGC TGGTCGATCA GGGCAATACC GTCATCGTCA TTGAACACGA CATGCACGTT
GTCGCAAACA GCGATTGGGT GATCGACGTC GGGCCGGGTG CCGGGGATGA GGGCGGAAAA
ATCGTCGTTT GTGGTACCGC GGCAGCTGTT GCCGCTGAAC CAGCAAGTAA AACGGGCAGA
TATCTGGCAG TTTGA
|
|---|
| Protein sequence | MLNFHTAIMS KKLESLPVSD FVKVRGAKEH NLKNVDLEIP RGALVVFTGI SGSGKSSLAF
GTLYAEAQRR YLESVSPYAR RLFNQMSIPQ VDSIDGLPPA VALQQQRGAT STRSSVGSVT
TISNLIRMLY SRAGDYPAGQ SIVYAESFSP NTPEGACPEC HGLGVVYEVT ERSMVPDDSL
SIREKAIAAW PTAWQGQNLR EILMTLGYDV DIPWRDLPKK DRDWILFTEE QPVVPVYSGL
NAEQVQRALA RKMEPSYMGT FTGAKRYVMQ TFANSPSQAM KKRVSRFMLS APCPVCHGKR
LRPEPLSVKF AGMDIAEFYQ LNIQRLHEII SSSLNLKNDR LNREHPEKAL VLLRIGHDLL
SRLDVLIDLG LGYLTLERST PTLSPGELQR LRLGTQIHSN LFGVVYVLDE PSAGLHPADT
QSLLRALDRL KAAGNSLFVV EHEIEIIRHA DWVVDVGPGA GEKGGEILYS GPLQGLEKVH
RSVTRRYLFD ADRNQKPARE AKGWLRLRDV SRNNLKHVDA DFPLGVLTSV TGISGSGKSS
LVSQALAELV LEKLGQQIPV IEDREDILLQ EEDIKTTSGY ISEDANQIRR LIQVDQKPIG
RTPRSNLATY TGLFDNVRKL FASTKMAKSR KYDAGRFSFN VAKGRCQNCE GEGFVMVELL
FLPSVYTPCP VCHGSRHNEK TLEVTYHDKN IAEVLAMTVD EAFEFFASEP PISRALDVVR
QVGLGYLRLG QPATELSGGE AQRIKLATEL QRAQHGNTLY ILDEPTTGLH PSDVDNLLVQ
LNKLVDQGNT VIVIEHDMHV VANSDWVIDV GPGAGDEGGK IVVCGTAAAV AAEPASKTGR
YLAV
|
|---|
| |