| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_0321 |
|---|
| Symbol | |
|---|
| ID | 8223887 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 366670 |
|---|
| End bp | 370266 |
|---|
| Gene Length | 3597 bp |
|---|
| Protein Length | 1198 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 644928199 |
|---|
| Product | TonB-dependent receptor plug |
|---|
| Protein accession | YP_003084756 |
|---|
| Protein GI | 255034135 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.325206 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCGTC ACTTAGCCAA GATAGATATG AGAAAAACTC AACGCGTTGA TGAGCCCGCG
CCGTGTTCGG CCTCGCTCGT TTTCCTGAGG ATCGGTCTCT TTCTGCTGCT GTTTTCAGGC
CCGATATCGC GAAGTACCGC GCAACAGTCA GGGCAGGATT CGACAAGAAA GACCAGGCCC
GACACCGCAG TAACCCCGGC TCCGAAAGCT GCACCAGTAC CCGGCAAGCC GGCCTCCGAT
ACCCTCCCCA AGCCTCAAAC TACCACCGAT TCTGCATCCA AATCCTCCAC TTCACCGCTG
GTGAAACCCA CGCAGAATTT CGATCCGCTG ATTAAGCCAG CCCCTCAGAA AGATACATTG
ACCAACCCCG GCGCTACCGG CAACCCGGCC GCCGCCAAAC CGGATAGCAA CGCCGTCCCC
GCACAGCCCG GTAATGCGAA TGCGGCACAG CCCGCACAAA ATGCAGCGCA AACGCCCGAT
TCGGTCGCCG CGCAAAAGCC GGCCCCCTCG GGCCCGACCG ACGCTGGTCC GGGCGCTCGC
GACATCAAGG GCGTGGTGAA GGATGAAAAG GGCGTAGGCA TGCCCGGCGT GGCCGTGCTC
GTGAAAGGCA CCCAGATCCA GGCCATTACC GAGCCGGACG GTTCGTTCCA GATGAAAGTC
CCTGCAAAAG GGGGGATATT GGTTTACAGT TTTGTAGGAT TTACTACGAA AGAAGCACCG
ATTACCGGCC TCACTACCTA CGATGCGCAG CTTGTACCCG AGGCGAAGGC ACTCAAAGAA
GTGGTGGTGG TGGGATATGG CGCACAAAGC AAACGCGACC TGGCCAGCTC CACTTCGCGC
GTCACCTCGC AGGAATACAA ATCCGCGGTG GTCAACACCA TCGACCAGGC CATTCAGGGC
CGCGCCACAG GGGTGCAGGT AGTGGAAAGT TCCGGTGAGC CGGGCGCTTC TACGGTGGTA
CGCATCCGCG GGAACAACTC GCTGAGCGGG AATAATGAGC CGCTGTACGT CATAGACGGC
TTCCCGATGC CGCCCTACCG CGAGGCTGGA ACGGGTTTCT ATGGTTCCTA CACCCAAAAT
GGCTTGTACG GCATTAATCC GAACGACATT GAAAGCATGG AAATCCTCAA AGACGCTTCG
GCAACAGCCA TTTACGGCTC ACGCGGCGCG AATGGGGTAG TCTTAATTAC GACGAAATCG
GGTAAGCGGG GCGAAGGCCG GGTGGAGCTG GTCAACAAAA CTTCGTTCGG GCGCATTGCC
AACCCGATTC AAATGATGAA CTCCCGGCAA TATGCCGAGG TGATCAACGA GAGCTTCCGC
GTGACCGACC GGAATCCGCC GTTTGAAAAC CTGGATAGCA CAATGACCAA CACCGACTGG
GTGGATGCCA TTACGCAGCA AAGTTTCAGG CAGGACATTA CATTGAGCCT TTCGGGAGGC
AGCCCTAAAT CCTCGTATTA CATTTCGGGT AATTATCTCA AAGACAAAGG CACGATCATC
AATTCGGATA ACGACCGGGC CAGTCTCCGC GTTAACCTGA ATAACGAGAT CAATAATTGG
TACACCGTAA AAGGACAGCT GTCGTTTACC CGGCAGAAAA CCAACCGTGC CGTAACCGCC
TCGCGCGCAT GGCCGAGCTC GGGCGGGCTC ATGGACGGCC TCCGCGCCGC ACCCACGCTC
GCAATCGATT ACCTGGGTAA TAACAGCCTG GGTATCCCGA ATTACCAGGG TTACTATTTC
TCCAACCCGT ACAACGAGCT GATGGCAAAG ACGGACGTCA CCCAGAGCGA TTACTCGATC
CTCAACATTG AAAACTACTT CAAAATCGCC AGCGGTCTGC AACTCGTGGT AAGCCTCGCC
GGTAACCAGA ACCTCACCCG CCGCAAGGTG TTCCTGCCGC CGACAACGGC CGAAGGCAAC
CAGGTGAAAG GAAAGGGAAG TAACACGACG GCCAATACGT ATAGCTATAA CTTCAACTCC
TACCTGCAAT ACGAAAAGAC CTTCCGCAAG AACCATTACC TGAATACAAC GCTGGGTGTG
GAATATAACG ACCAGACTGT TGAATTCCTC AACACCAACT CTTCGGGCTT TGCAGTGCCG
TTTTTTGGGG TAGATAACAT CGGAAGCGCA CAATCGCAGG TGATCGCATC GTTCAAGGAA
AAGCGCATCC TGCAATCGGG TTTCCTGCGC GCCAACTACT CTTTCAAAGG CCGCTACGTG
CTCAATGCGT CCATCCGCGC CGATGGGGCC TCGGCATTTG CCGCTAACAA AAAGTACGGG
ATCTTCCCGG CGGTGGCCGT GGCCTGGAAC CTCGATCAGG AGGAATTTAT GAAGGGCGTT
ACCTTCGTCA CCAACACGAA ATTCCGTGCA TCATACGGTG AAACCGGAAG CCAGGCTATT
TCTCCCTATT CGTCACTGTC GCTGTATAGC GCCGGTTTCT ACGAAATGGG ACCGGGCGGA
GATGGCTCCG TGATCAACAC GGGCGTTTTC CCGAACACGA TCGCTAATCC GAACCTCTCG
TGGGAGCGTA CCAAGCAGTT CAATGTCGGG GTGGATTTCA ATGCGGTAAA AGACCGGCTG
GTTTTGAGTT TTGATTATTA CAACAAAGTC ACCTCCGATC TGCTGCAACC CCGCAAAGTG
CCTACGCAAT CCGGCGTGAG CACGATCATC GACAACTACG GTACCATGCG CAACCGCGGT
ATAGAGGTGA GCATTCAGGG AAATATTGTG CAGAATAAGA ATGTGACTTA CTCGACCCGG
GTGAATGTTT CGAGAAACGT CAACACGCTC GTAGACCTGG GCGACCGCAC GCAGCCGGAT
TATGTGAATA TCAATGGTAA CCTGCTCGGC GGCGTGTCGG GTATTCTGGT GCCGGGGCAG
GAGGTAGGAC AATTTTTCGG CTACCGCGTC GACGGCCTCA GCCAGACAAA CGACTTCGAC
GCCAACGGCA ACCCCACATT CCCGACCTTC GAAGGCCCGC GCCCGCCAGG CTCGACCGGA
ACACCGCTGT ACGGCGCTTG GAAGTATGCG GACGTGAACA ACGACGGCAT TATCACCGCC
GACGACCGCG TGGTGCTCGG CAAATCCACG CCGGACTTTA CCTTCGGATG GAGCCATGAC
CTTACGTGGA AAAATTTCGC GGTGAATGCA TTGTTCACCG GTTCGGTTGG CAACGACGTG
CTGAACCTCA CGCGGTTCTA TGTAAGCAAT GGCGTGGTGG ATTATGGCGG CGTCGGGTTT
AACCAGTCTG AAGAATGGTT CCTGAACCGC CACACGGAGG CCAACCCGCA CAACAACGTG
AAATATCCGG GCGTACAGCG CGGTATCGCG TCGGGGGACA TCAATTCGGT CATGGTCGAA
GACGGCAGCT TTGCCCGACT CAAAATGCTC ACCGTATCGT ACACCTTCCC GAAACTCGGC
CCGATCCAGA ATCCCCGGCT TTTTGTAACA GGCACCAACC TGTGGACGTG GACCAAATAC
TCGGGTTTCG ATCCCGAGGT GAGCTCCTTC GGGCAATCGC TCTTGCAACA GGGCATCGAC
TACGGCGCAT ATCCCGCGCA GCGATCATAC ACCATCGGGT TTTCCTGCAA TTTTTAA
|
|---|
| Protein sequence | MSRHLAKIDM RKTQRVDEPA PCSASLVFLR IGLFLLLFSG PISRSTAQQS GQDSTRKTRP
DTAVTPAPKA APVPGKPASD TLPKPQTTTD SASKSSTSPL VKPTQNFDPL IKPAPQKDTL
TNPGATGNPA AAKPDSNAVP AQPGNANAAQ PAQNAAQTPD SVAAQKPAPS GPTDAGPGAR
DIKGVVKDEK GVGMPGVAVL VKGTQIQAIT EPDGSFQMKV PAKGGILVYS FVGFTTKEAP
ITGLTTYDAQ LVPEAKALKE VVVVGYGAQS KRDLASSTSR VTSQEYKSAV VNTIDQAIQG
RATGVQVVES SGEPGASTVV RIRGNNSLSG NNEPLYVIDG FPMPPYREAG TGFYGSYTQN
GLYGINPNDI ESMEILKDAS ATAIYGSRGA NGVVLITTKS GKRGEGRVEL VNKTSFGRIA
NPIQMMNSRQ YAEVINESFR VTDRNPPFEN LDSTMTNTDW VDAITQQSFR QDITLSLSGG
SPKSSYYISG NYLKDKGTII NSDNDRASLR VNLNNEINNW YTVKGQLSFT RQKTNRAVTA
SRAWPSSGGL MDGLRAAPTL AIDYLGNNSL GIPNYQGYYF SNPYNELMAK TDVTQSDYSI
LNIENYFKIA SGLQLVVSLA GNQNLTRRKV FLPPTTAEGN QVKGKGSNTT ANTYSYNFNS
YLQYEKTFRK NHYLNTTLGV EYNDQTVEFL NTNSSGFAVP FFGVDNIGSA QSQVIASFKE
KRILQSGFLR ANYSFKGRYV LNASIRADGA SAFAANKKYG IFPAVAVAWN LDQEEFMKGV
TFVTNTKFRA SYGETGSQAI SPYSSLSLYS AGFYEMGPGG DGSVINTGVF PNTIANPNLS
WERTKQFNVG VDFNAVKDRL VLSFDYYNKV TSDLLQPRKV PTQSGVSTII DNYGTMRNRG
IEVSIQGNIV QNKNVTYSTR VNVSRNVNTL VDLGDRTQPD YVNINGNLLG GVSGILVPGQ
EVGQFFGYRV DGLSQTNDFD ANGNPTFPTF EGPRPPGSTG TPLYGAWKYA DVNNDGIITA
DDRVVLGKST PDFTFGWSHD LTWKNFAVNA LFTGSVGNDV LNLTRFYVSN GVVDYGGVGF
NQSEEWFLNR HTEANPHNNV KYPGVQRGIA SGDINSVMVE DGSFARLKML TVSYTFPKLG
PIQNPRLFVT GTNLWTWTKY SGFDPEVSSF GQSLLQQGID YGAYPAQRSY TIGFSCNF
|
|---|
| |