| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DehaBAV1_1162 |
|---|
| Symbol | |
|---|
| ID | 5131259 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. BAV1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009455 |
|---|
| Strand | + |
|---|
| Start bp | 1136964 |
|---|
| End bp | 1137641 |
|---|
| Gene Length | 678 bp |
|---|
| Protein Length | 225 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640530087 |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_001214619 |
|---|
| Protein GI | 147669801 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.130665 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGACA ACAGTAAAAT CAGGGTAATG GTCATAGATG AGCAACCATT TTTCAGAGCG
GGTGTTGCCC AGGCCTTGTC CGACAATAAT TTTGAGATAT TGGCAACAGA CACTCACAAA
GACCCCCTGG AACAGGTTGA AACCAAGATG CCTGATGTAG TTTTGCTGGG TTCAGACCTG
ACCGCTTACA GCGGGTTGGA TTTGGGGCGG CGTATTGTGC GTACCTTCCC CAATACCAAG
GTTATTATCC TTTCCCCAAA CCCCAATGAT ACCGAACTGT TTGAATGCAT AAGAACAGCG
GCTGTAGCCT GTCTGAAAAA GAGCAGCACT GCTGAAGAGC TTATTGAAAC TATACGCCGG
GCAAACCGGG GGGAGTATCC TATCAATGAA AGCCTTATGG GTAGCCCTAG CCTGGCTAAA
CAGGTATTGG CCCAGTTTCA AGATGTCTCC ATGCTGGGTA AAGATGCCTC TAGTTTTGTT
GCCCCCTTGA CCAATCGTGA AAAACAGATA TTGACCTTGA TTGCCAACGG CAATACCAAC
AAGCAAATTG CCAACAATCT GGAAATAAGC GAGCAAACCA TAAAAAACCA TGTCAGCGCC
ATTTTACGCA AATTAAATGC CAATGACAGG GCACATGCGG TTGTTGTAGC TATACGCTGT
GGCCTGATAA ATATATAA
|
|---|
| Protein sequence | MEDNSKIRVM VIDEQPFFRA GVAQALSDNN FEILATDTHK DPLEQVETKM PDVVLLGSDL
TAYSGLDLGR RIVRTFPNTK VIILSPNPND TELFECIRTA AVACLKKSST AEELIETIRR
ANRGEYPINE SLMGSPSLAK QVLAQFQDVS MLGKDASSFV APLTNREKQI LTLIANGNTN
KQIANNLEIS EQTIKNHVSA ILRKLNANDR AHAVVVAIRC GLINI
|
|---|
| |