| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DehaBAV1_0934 |
|---|
| Symbol | |
|---|
| ID | 5131656 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. BAV1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009455 |
|---|
| Strand | + |
|---|
| Start bp | 918901 |
|---|
| End bp | 920667 |
|---|
| Gene Length | 1767 bp |
|---|
| Protein Length | 588 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640529858 |
|---|
| Product | DNA repair protein RecN |
|---|
| Protein accession | YP_001214392 |
|---|
| Protein GI | 147669574 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0497] ATPase involved in DNA repair |
|---|
| TIGRFAM ID | [TIGR00634] DNA repair protein RecN |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.590863 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTAGTTG AACTTCGGGT AAAAAATTTT GGCATTATTG AAGATATCAC ATGGTCACCG
GGTGAAGGCC TTAATGTCAT TACCGGTGAA ACCGGAGCCG GAAAATCACT GGTCATAGAT
GCGGTGGAAA GCCTGCTTTC CGGGCGTATC GGTGACGAAC AAATCCGCCA CCAGACCAAC
GAAGCTACTC TGGAAGGAAT CTTCTATTTA AACCCCGCCA GCCGCCTTAA AATAGCCGCT
CTGCTGGCAG AAAATGGGCA GGAACTGGAA GATGATACCC TTATTATCCG CCTTGAGTCC
AAACTGGCTG GACGCAGTGT TCTAAGGTTA AACGGCAGTG CCATAAGCCG TTCTGTCCTA
AGCCGCCTCT GCCCGTATCT TATTGATATA CACGGCCAGA GCGAACACCT GTCCCTGCTG
AACAAGTCTT TCCATCTGGA TATGCTGGAC GGTTATGCCC ATACCACTAT CCAGCGCACT
GAATTTGCCC GTCTGGCAAA TGAACTAACC AATCTGCAAA GGCAACTGTC TGAGCAGGAA
AAAATAAACC GTGAAGCTGT CCGCCAGCAG GAATTTCTGC GTTTTCAGGC AGATGAAATA
GAGGCGGCTA ACCTTGCCGA AGGAGAAGAG GAAAGCCTGC TTTCCAAACG GCAGGTTATG
GCTTCCACCG AAAAATTAAA AACACTGGTT CACCAGTCAC TGGAACATCT CTGTAGCGGG
CAAAACGGTG GCGCACTGGC AGATTTAAAC CAAGCAATGC AGTCTATAAG AAAAATAGCC
GAAATAGACC CCGCCCTAAA AAACACGGCA GATGAAGTTG AGAATACCTA CTTCATCCTT
GAGGAAAGCA TCCGCTTGGT GCAAAGCTAT AACCGTGGGC TGGATTTTAA CCCCTCGGAA
CTGGAAGATA TTGAAAACCG TCTGGCACTT ATCCACAGTC TGGAAAGGAA ATACGGGCGG
GATATTCCCC AGATACTGGC CTTTTTGGCT AAAACCAAAG CCGAACTGGA TAATATAGGT
CACTTTGCCC AAAATATAGA TAGACTAGGC GGTGCTATAA CAGACTTAAA AAGCCGACTT
GGAGATATGG CTTCTTCACT AAGTGCACTT CGCAAAGAAG CCGCCCAGAA ACTGGAAAAA
GCCGTTCAAA CCGAACTCTC AGACCTTAAT ATGGGTCAGG TAATATTTAA AGTAAATTTC
CAGACCCAAG CGGATGAAAA TGGTTTGCCG GTAGACGGAC AAATACTTGG TTTCTCATCC
AGCGGTACAG ACCTGGTGGA GTTTTTTGTA AGCACCAATC CCGGCGAACC TCTCCGCCCT
CTTAACAAAA TAGCTTCTAC CGGTGAAATA TCACGCATTA CTCTGGCGTT AAAGAGTGCT
GCTTCTCGTT TGGATGATAT ACCGGTAATG ATATTTGATG AAATTGATAT AGGCGTAGGC
GGACGCTCCG GAGATATGCT GGGGCGAAAA CTCTGGAAGC TGTCACAGGG GCATCAGCTG
ATAAGCGTTT CTCACCTGCC CCAGATAGCT GCTTACGCAG ACCACCACTT TTATGTTTCC
AAAACCGAGT TTAACGGCAG GATAAACAGC CATATTGAAC ACTTAAATAC TGAAGGACAC
CTTGCCGAAC TTTCAGTAAT GCTGTCAGGC AACCAAACGG ACGAGAAATC GCTGGAAAAC
GCCCGTGAAC TCTTAAAAAA GGCATCTATA TTTAAGGAGA CCAGCCCCGA ACAGCCCGAA
CTGAACATAC CCCTAAGCGG TAGATAG
|
|---|
| Protein sequence | MLVELRVKNF GIIEDITWSP GEGLNVITGE TGAGKSLVID AVESLLSGRI GDEQIRHQTN
EATLEGIFYL NPASRLKIAA LLAENGQELE DDTLIIRLES KLAGRSVLRL NGSAISRSVL
SRLCPYLIDI HGQSEHLSLL NKSFHLDMLD GYAHTTIQRT EFARLANELT NLQRQLSEQE
KINREAVRQQ EFLRFQADEI EAANLAEGEE ESLLSKRQVM ASTEKLKTLV HQSLEHLCSG
QNGGALADLN QAMQSIRKIA EIDPALKNTA DEVENTYFIL EESIRLVQSY NRGLDFNPSE
LEDIENRLAL IHSLERKYGR DIPQILAFLA KTKAELDNIG HFAQNIDRLG GAITDLKSRL
GDMASSLSAL RKEAAQKLEK AVQTELSDLN MGQVIFKVNF QTQADENGLP VDGQILGFSS
SGTDLVEFFV STNPGEPLRP LNKIASTGEI SRITLALKSA ASRLDDIPVM IFDEIDIGVG
GRSGDMLGRK LWKLSQGHQL ISVSHLPQIA AYADHHFYVS KTEFNGRINS HIEHLNTEGH
LAELSVMLSG NQTDEKSLEN ARELLKKASI FKETSPEQPE LNIPLSGR
|
|---|
| |