| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DehaBAV1_0670 |
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| Symbol | dapF |
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| ID | 5131183 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dehalococcoides sp. BAV1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009455 |
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| Strand | - |
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| Start bp | 659929 |
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| End bp | 660783 |
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| Gene Length | 855 bp |
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| Protein Length | 284 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640529578 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_001214132 |
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| Protein GI | 147669314 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0136739 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAATTCA CTAAATTGCA AAGCGTAGGC AATGACTTTG TTCTCTTGGA CCCGCAAGGT
GAAGAGCAGG ATTGGCCAAA ACTGGCACTC CATATGTGCC ACCGCCACTT TGGTGCCGGT
GCTGACGGGC TGATGCTGAT TTTGCCTTCC GAGAAAGCAG ATTTCCGGAT GCGCATTTTC
AACGCAGACG GCTCTGAAGC CGAAATCTGC GGCAATGGCT TGCGTTGCCT TATTCATTAT
ATAGCTGTAA ACAAGCTACT TGGCAACCTA GACGAACTGA GTATTGAAAC TCTGGCGGGT
ATGCGGCACG CCCAGATATT TAAAGACGGA CGGATACGCA CCACCATGGG CAAACCCATG
TTTGAAGCCC ACCAGATACC TGTTGCCGCC GAACCAGATC CAAAGCACTA TAACGGACAG
CTTATTTCTG ATTTTCCTTT AAATATAAAT AACCGACGGG TGCTTGTTTC ACTGGTATCT
ATGGGTAATC CGCATGCTAT CCATTTTTGC ACCAAACCGG TTGAAGAATT CCCTCTGGGT
GAAGTGGGCT CACAGGTGGA AATCCATAAA GCTTTCCCAA AACGTACCAA TTTTGAAGTT
GCAAATATTC TTGATACCGA GCATATAAAA GTGCGGGTTT GGGAACGAGG GGTAGGGGAG
ACGCTGGGTT GCGGTAGCGG TGCATCTGCA GTGGCGGTTG CCGCCCAGAT ACTGGGATAT
GTCGGTAAAT TCGTTTACAT AAAGTTACCG GGCGGAACAC TAGGAGTTGA ATGGGACGGT
CATGATGACG TTTATCTGAC CGGAAAAGCT GAAATTATAT ATACGGGAGA ATGGTTGAAA
GATGAAATTA TCTAA
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| Protein sequence | MKFTKLQSVG NDFVLLDPQG EEQDWPKLAL HMCHRHFGAG ADGLMLILPS EKADFRMRIF
NADGSEAEIC GNGLRCLIHY IAVNKLLGNL DELSIETLAG MRHAQIFKDG RIRTTMGKPM
FEAHQIPVAA EPDPKHYNGQ LISDFPLNIN NRRVLVSLVS MGNPHAIHFC TKPVEEFPLG
EVGSQVEIHK AFPKRTNFEV ANILDTEHIK VRVWERGVGE TLGCGSGASA VAVAAQILGY
VGKFVYIKLP GGTLGVEWDG HDDVYLTGKA EIIYTGEWLK DEII
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