| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DehaBAV1_0578 |
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| Symbol | rpoB |
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| ID | 5131252 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dehalococcoides sp. BAV1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009455 |
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| Strand | + |
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| Start bp | 563580 |
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| End bp | 567302 |
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| Gene Length | 3723 bp |
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| Protein Length | 1240 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640529481 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001214041 |
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| Protein GI | 147669223 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.219767 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGTTGC AGTCTTTTGT CTGGTTTCAA GAGGAGGGTC TCCGTGAGCT GATTGAGGAG
ATTTCTCCCA TCAAAGACTT CGTGGGTAAC AGGCTGGAGC TGGAATTCAT AGGCTACGAA
TTCAGAGAGC CCCGTTTATC CGAATACGAA TGCACCCAGC GTGACCAGAC CTACTCTGTA
CCCCTGTACG TAAAGGCCAG GTTGATTGTA AAAACTACCG GTGAAATCAA AGAACCCTTT
GATCTGTTCT TTGGGGATAT TCCCCTTATG ACCGCCTTGG GTACATTTAT CACCAGCGGT
ACCGAACGGG TAGTGGTCAG CCAGCTGCTG CGTTCACCGG GTGTCTACTT TACCATTTCA
GATGACCCGG CAACCGGCCG TCCCCTCTGC CATACCAACC TTATTCCCAG CAGGGGTGCT
TGGCTTGAAT TTGAAACTTC CAACCGTGAT GTTATTTCAG TAAAGATTGA CGGACGCCGC
AAGATTCCCG TCAGCACCCT GTTGCGTGCC ATAGGTTATT CCGATGATCT GGATATTTTA
AACCTGTTTG AGGTTATTGA TAATGACCCC GAACGCCACT ATATCCAGTC CAGTATTGAC
CGTGATCCCC TGATAAAAGA TGAGATTAGT GCCCTTATCG ATATTTACAG CCGCTTGCGT
CCCGGTGATC CGCCAAACGC GGATAACGCC CGCAAACTTA TTAATGAAAT GTTCTTTGAC
CCCCAGCACT ATGATCTGGG CAAGGTAGGC CGTTACAAGG TTAACCGCCG TCTGGAATTG
CCTTCCCGTG AGGTAGGTGA AAACCGTGCC CTTACCCGTG AAGACATAGT AGCCATTATC
CAGCGGATTA TCATGGTCAA TAACGGCCAG GATACTCCGG ATGATATTGA CCATTTGGGC
AACCGAAGAA TCCGCACTGT AGGTGAACTT GTTCAAAACC AGTTCCGCAT AGGGCTGGTG
CGTTTGGAAA GAGTTGCCCG TGAACGGATG AGCATTGTTA ATCTGGAAAT GGTTACACCC
AGCGCTCTGG TTAATATCCG CCCTGTGGTT TCAGCCGTTA AGGAGTTCTT TGGCGGTTCA
CAGCTTTCCC AGTTTATGGA TCAGACTAAC CCTCTGGCTG AAATAACCAA TAAACGCCGT
CTGTCTGCCA TGGGCCCCGG CGGTCTTTCC CGCGAAAGGG CCGGCTTTGA TGTTCGTGAT
GTTCACTACT CTCATTACGG GCGTATCTGC CCCATTGAGA CACCTGAAGG CCCGAACATT
GGTCTTATCG GTTCTCTGGC TACCTATAGC AGGATTAACC GCTACGGCTT TGTGGAGACC
CCTTACCGCA AGGTTTATTC AAAACTGAAA AATAATGATA AAAAACTGGT TGGTCTTAAA
CTGAAGACTG AAATCAGTGA AAAAGGCAAA GTACTGGCGG CTGCCGGCAG TACAATCAGC
GAAGACAGTT TCAAGATTAT TTCAAAGCTG CCTGAGTGTG ATATTTCGGT TATGCCTTTT
GTGTCTGCCG AAGTCAAATA TATGCCTGCA GACGAAGAAG ATCGCTATAT AATTGCTCAG
GCTAATACCC GTTTGGACGA GAAGGGCTAT TTCCTCGATG ACAGGATTGA AGCCCGTTCG
GCTGAAAGAT ATGTGGTAGA GCCCCCAGAT AAGATTGATT ATATGGACGT TTCGCCCAAG
CAGATCTTCA GTGTAGCGGC TTCTCTCATT CCCTTCCTTG AGCATGATGA TGCCAACCGT
GCCCTTATGG GTGCGAATAT GCAACGCCAG GCTGTGCCTT TGCTTCGGGC TGAGGCACCT
ATGGTAGCTA CAGGTATGGA ACGTGAAGCG GCCAGATACT CCGGTCAGGT AATCTTTGCC
AAACATGCCG GTGTAGCCAG TTCGGTTACC AGTGAAAAAA TAATAATCCG TACCGCCGAA
GGCGGACACG ATGAATATCT GCTGAAGAAA TTTGTTCGTA CCAATCAGGG TACCTGCATA
AATCAGCATG CCATTATAAA CAAGGGGCAG AAGATAGCAG CCGGGCAGGT ACTGGCTGAC
AGCTCTGCCA CTGAAAACGG CGAACTGGCT TTGGGGCAAA ACTGTGTGGT GGCCTTTATG
AGCTGGCAGG GTTTCAACTA TGAAGATGCC ATTATCCTTA GTGAACGGCT GGTACGTGAA
GATGCCTTTA CCTCCATTCA CATTACCAAG CACGAACTTG AAGCCCGTGA TACCAAACTG
GGTGTTGAAG AAATAACCCG TGATATTCCT AACGTAGGTG AAGAAAGCCT GCGCGAACTG
GACGAAGACG GTATTATCCG TATAGGGGCT GAAGTTGGCC CTGACGATAT TCTGGTTGGC
AAGATCACCC CCAAGGGTGA AACCGAACTT TCAGCTGAAG AAAAATTGCT TAGGGCTATC
TTCGGCGAAA AAGCCCGCGA AGTTAAAGAC ACTTCACTCC GTATGCCTCA TGGTGAATGG
GGCAAGGTTA TAAATGTAAG GATTTTCTCC CGTGACAGCG GTGATGACCT GCCTGCCAGA
GTTAATAAAT GGGTACAGGT CTGGGTTGCC CAGAAACGCA AGGTTTCAGT GGGTGACAAA
CTGGCCGGCC GCCATGGCAA CAAGGGTGTT ATATCCATAA TTGCCCCGGT AGAAGATATG
CCTTACCTGC CTGACGGCAC TCCGGTGGAC GTGGTTTTGA ACCCCATCGG CGTACCTTCA
CGCATGAACC TGGGGCAGAT TCTGGAAACT CATCTGGGCT GGGCAGGGCA TCTGCTGGGC
TTTAGGGTGG CCACCCCCGT ATTTGACGGT GCCGATGATA CTGTAATTGA AGACGCTTTG
GCCCGTTCTT GGCTCTCTGC CAAGGCCGGT GCAATAGATA TGAGCCCTGA AAACAAACGT
CCCAGTGCAG ACGCTCACAA GGCTATAGAG TGGATAAAAC AGCAGGGCTT TGACGGCAAG
AAAATATTTG ATGAAAAGCA CCCCGGTCTG GCCAAGGAAG TCAGCCTTAA GCTTTGGCTT
AAGGATATGG GCGTAGATGC CTCCGCTTTA AGCGGGGCTG AACTGGAAAA GAAAGCTTAC
GACGTAAGCA GCCAAAGCCG CCTGCCTTCG CCTATTGTGG GTAAATCAGT GTTGCGTGAC
GGTCGTACCG GCGAAACCTT TGACCAGCCG GTAACCGTAG GCAATATGTA TATCCTTAAA
CTTATCCATC TGGTGGAAGA CAAGGTACAT GCCCGTGCTA CCGGTCCTTA CTCACTCATC
AGCCAGCAGC CTCTGGGCGG TAAAGCCCAG TTCGGCGGCC AGCGCTTCGG TGAAATGGAA
GTTTGGGCTA TGTACGCTTA CGGTACGGCT CATAACCTTC AGGAAATGCT GACTATCAAG
TCAGACGATA TTGCCGGACG TGCCAAGGCT TATGAATCCA TAGTAAAGGG TGAGGATGTG
CTCCAGCCCG GTGTACCCGA ATCCTTCAAG GTATTGGTAA AAGAACTGCA GAGCCTGGGG
CTGGCAGTTG AAGTAATAAA TGAAGAAGTC AAAATTGCTC CATCTGAAAA GGTGTCCTCT
TTAAATGAGG GAAACTTGCC GGCGAGTGAT GAGATTTCTG CCGAAATACT TCCTGAAACT
TTGTATGCCA ATACAGAGGA TATCAGTGAA GATTCCATGA TGTCGGTAAT AGATGCCGAT
GACCAAGATT TGGTAGTGTC ATCAAATGAT GAAGAGGTAT CCGAAAACGA TGAACGAAGT
TAA
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| Protein sequence | MQLQSFVWFQ EEGLRELIEE ISPIKDFVGN RLELEFIGYE FREPRLSEYE CTQRDQTYSV
PLYVKARLIV KTTGEIKEPF DLFFGDIPLM TALGTFITSG TERVVVSQLL RSPGVYFTIS
DDPATGRPLC HTNLIPSRGA WLEFETSNRD VISVKIDGRR KIPVSTLLRA IGYSDDLDIL
NLFEVIDNDP ERHYIQSSID RDPLIKDEIS ALIDIYSRLR PGDPPNADNA RKLINEMFFD
PQHYDLGKVG RYKVNRRLEL PSREVGENRA LTREDIVAII QRIIMVNNGQ DTPDDIDHLG
NRRIRTVGEL VQNQFRIGLV RLERVARERM SIVNLEMVTP SALVNIRPVV SAVKEFFGGS
QLSQFMDQTN PLAEITNKRR LSAMGPGGLS RERAGFDVRD VHYSHYGRIC PIETPEGPNI
GLIGSLATYS RINRYGFVET PYRKVYSKLK NNDKKLVGLK LKTEISEKGK VLAAAGSTIS
EDSFKIISKL PECDISVMPF VSAEVKYMPA DEEDRYIIAQ ANTRLDEKGY FLDDRIEARS
AERYVVEPPD KIDYMDVSPK QIFSVAASLI PFLEHDDANR ALMGANMQRQ AVPLLRAEAP
MVATGMEREA ARYSGQVIFA KHAGVASSVT SEKIIIRTAE GGHDEYLLKK FVRTNQGTCI
NQHAIINKGQ KIAAGQVLAD SSATENGELA LGQNCVVAFM SWQGFNYEDA IILSERLVRE
DAFTSIHITK HELEARDTKL GVEEITRDIP NVGEESLREL DEDGIIRIGA EVGPDDILVG
KITPKGETEL SAEEKLLRAI FGEKAREVKD TSLRMPHGEW GKVINVRIFS RDSGDDLPAR
VNKWVQVWVA QKRKVSVGDK LAGRHGNKGV ISIIAPVEDM PYLPDGTPVD VVLNPIGVPS
RMNLGQILET HLGWAGHLLG FRVATPVFDG ADDTVIEDAL ARSWLSAKAG AIDMSPENKR
PSADAHKAIE WIKQQGFDGK KIFDEKHPGL AKEVSLKLWL KDMGVDASAL SGAELEKKAY
DVSSQSRLPS PIVGKSVLRD GRTGETFDQP VTVGNMYILK LIHLVEDKVH ARATGPYSLI
SQQPLGGKAQ FGGQRFGEME VWAMYAYGTA HNLQEMLTIK SDDIAGRAKA YESIVKGEDV
LQPGVPESFK VLVKELQSLG LAVEVINEEV KIAPSEKVSS LNEGNLPASD EISAEILPET
LYANTEDISE DSMMSVIDAD DQDLVVSSND EEVSENDERS
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