| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DehaBAV1_0369 |
|---|
| Symbol | |
|---|
| ID | 5132135 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. BAV1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009455 |
|---|
| Strand | + |
|---|
| Start bp | 377240 |
|---|
| End bp | 378214 |
|---|
| Gene Length | 975 bp |
|---|
| Protein Length | 324 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640529270 |
|---|
| Product | polyprenyl synthetase |
|---|
| Protein accession | YP_001213832 |
|---|
| Protein GI | 147669014 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0142] Geranylgeranyl pyrophosphate synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0000634343 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGTTGAAAC TTAGCTCTAT CTACGCACCT ATAAACGAAG GCCTCAAAGG GGTTGAGGAC
GAATTTAAAC TGGTATCCGA AAGCCGCAAG AAGTCTTTTC CCGAAATGGC GGAAATGCTG
GACTATATTC TAGTAGGGGG CAAGGTGCTC AGACCGGCGC TTTCCATGCT GTCTGCCATG
TGCTTCGGTG CCGGCATAAA AAAAGTATTG CCGTTGGCTA CATCTTCCGA AATGCTTCAC
ATAGCAACAC TGGTGCATGA TGACGCTATT GACAAGGCTG ATACCCGCCG CGGACGCCGG
ACAGTTAACG CTGTCTGGGG GCTGGAGAAG GCTATACTTT TAGGAGATTT CCTGTTTGCC
CATGCCGCCG AAACAGCGGC TGAAACCGGC AATATGGGTA TAGTCACCCT GTTTTCCCAA
ACCCTGCAGA TAATTGCCTC CGGAGAGCTT AAACAGGCTT ATGCCAGTTT TAACCCTGAC
CAGAGCTATG AAAACTATCT GGAAAGAATA TCTGGCAAGA CGGCTGCCCT TTTTGTAATG
GCTACTAAGG GTGGGGCTAT ACTGGCGGAT GCCTCACCGT CTGACGAAGA GATAATGCGT
TCTTACGGCT ATAATCTGGG CTTAAGTTTC CAGATAGTAG ATGATATACT GGATTTTGTG
GGTAATGCCA AGGATATGGG CAAACCGATA GGTTCAGACC TGAATAACGG CACAGTTACT
TTGCCGGCCC TGCTCCTGAT GGATCGTTAT CCGGATAATA ACCCCATCAA GGATATGCTT
AATGCTACTG ACCGTATCCC TCATGTTGCC AAAGCAGTTG AGATGATAAA TTCATCAGAT
ATCATAGACC TTAGTTATAA AGAGGCTAAA CGCTATGCTG ATTTGGCCTG CCGAAATTTG
TCACAGCTGC CTAAAACGGC CGCCCGCGAA TCTCTCTACC AGTTGGCTGA GTTTATAGTT
GAACGCAAAA ATTGA
|
|---|
| Protein sequence | MLKLSSIYAP INEGLKGVED EFKLVSESRK KSFPEMAEML DYILVGGKVL RPALSMLSAM
CFGAGIKKVL PLATSSEMLH IATLVHDDAI DKADTRRGRR TVNAVWGLEK AILLGDFLFA
HAAETAAETG NMGIVTLFSQ TLQIIASGEL KQAYASFNPD QSYENYLERI SGKTAALFVM
ATKGGAILAD ASPSDEEIMR SYGYNLGLSF QIVDDILDFV GNAKDMGKPI GSDLNNGTVT
LPALLLMDRY PDNNPIKDML NATDRIPHVA KAVEMINSSD IIDLSYKEAK RYADLACRNL
SQLPKTAARE SLYQLAEFIV ERKN
|
|---|
| |