| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ddes_2284 |
|---|
| Symbol | |
|---|
| ID | 7286002 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011883 |
|---|
| Strand | + |
|---|
| Start bp | 2749785 |
|---|
| End bp | 2752034 |
|---|
| Gene Length | 2250 bp |
|---|
| Protein Length | 749 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643583107 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_002480857 |
|---|
| Protein GI | 220905545 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2200] FOG: EAL domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00235544 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAACA AACCCGCCCC AACCGACATC AAAAAAAATT TCGCTGTAGC CCCCATGACA
TGCCTCGCAA GCGGCAGAAT GGAAGAGCAG TGCTATTCAG GCGTGCTGCG CAGCGTCTAC
GCCGAAATAT ATCTTCTGGA CTTTGAAAAG GACGAAGCGC GCGAACTGTA CAGGGGCGAT
GACACGCTTC TGGGACCTTC GGGCGAATTC ACCCTGTCGG AGCTTTTTAC CGAGGCTCTG
ACCAGGCTCG TCCACCCTGA CGACCACAAT GCGCTGCTGC GCTTCTGGGA CCCTTTGTCC
AGGCAGGATC TTGAAAAAAA CGGCCTGCCG TTCTCAACGC TTGACGTGCG CAGAAAATGC
CACGACCTGA GCTACCGCTG GACGCGCATT ACCGCATTTC CCGTCCGTCA GCCCGGCGGG
CATTTCGTAT ACCTTGTCTG CGTGCAGGAT GTGGACGACC TCAAGCGCGC GGCCACCATT
GTGCGTGAAA ATGAGCTTCT CCAGCAGCAG AAGCTCGATA ACCTGCGCTA CAAGGCCGTG
GTGGACCATA CACGCACGCT GGTATTCGAG TGGCGCAATA ATGATCTTAC CTACATCAGT
CCCCGCATAG GCGAACTGCT GGCCGGAAAT TACGATGGCC GCATTCCCTT TGATGTCTGG
CGTGAGGACA ATGTGCTGTA CAGCGGCGAC AGCGCCGCCT TTGACACCTG CCTTTCACGT
CTGGCCCTGG GCATACGCTC CGGCGAAATG ACCCTGCGCC TGCGCCGCCG CGACGGGCAG
TTCATCTGGT GCAAGGTCAC CTATACCTGC CTGGCGGACG ACAGCCCGGG TGAACGCTAC
ATCGGCACCA TCAACGACGT GGATGCCGCC ACCCGCACAG AGCAGGCCCT GCGCCTGCGA
GCCGAGCACG ATCCCCTCAC AGGGGCGTAC AATACCCAGA CATTTTTTGA AAAGGTAGAA
GCGCTGCTGC GCGAGTATCC CACAGAGCCG TACGCCGTCC TGCGCTTTGA CGTGGCGGGC
TTCAAGGCCA TCAACGAAGC CTTCAGCCTG GAAGAAGGCA ACCGCCTGCT GCGGGCCATC
GCCCGCCTCA TCCGCCAGCG CATCAACACC CAGTGCGAGG CTTACGCCCG CCTTACGGCC
GATGTGTTTG CCGTGTGCAT CACTGGCGAC ATCAACCGGA TAAAAAACTT CATCCACTCC
CTTTCCCGCA GGCTCGAGCA TTACTCCGAC ACATTCAGGG TCAAGCTTTT CTTCGGCGTC
TGCCAGGTGG AAAATCGCCG GACTCCTGCC CACGTGCTCT GCGACTGGGC CTATCTGGCG
CAAAAAACCA TCAAGGGCAG CGACCTTGCC AACTATGCCT TTTATGACAA CGCGCTGCGC
CAGCGCCTGC ATGACGAAAG CTACATTACC GACCAGATGT ACCGCGCACT GGAGCAAAAA
CAGTTCAAGC TCTACCTGCA GCCCAAGGTG GAGCTGTCGA GCGGCCGCAT CGTGGGGGCC
GAGGCTCTTG TACGCTGGCA GCACCCGCAC GACGGACTGA TCCTGCCAGG CCGCTTTGTG
CCGCTTTTCG AGCGCAACGG TTTTATCGTG CGTCTCGATG AATACATCTG GGACCTCACC
TGCCAGAACC TGCGCATGTG GCTGGACAAG GGCTACAAAC CCATGCCCGT CTCGGTAAAT
ATGTCGCGCC TGCACTTTAA TGACGGCGCT CTGACAAAAA AACTGGTTCA GCTTGTAGAC
AAATACCGCC TGCCGCGCCA CCTGCTCGAG CTGGAACTCA CCGAAAGTGC CTTTTTCAAA
AATGAAAAGG CCCTCATTCA CATCATGTGT GAACTGCAGG CCGAAGGTTT TATTTTTTCA
ATGGATGACT TTGGTACGGG CTATTCTTCG CTGAGCACCC TGCGCGCCCT GCCGTTCAAC
ATCGTCAAGC TGGACCGCGC CTTCATCAGT GACGGCACGG ACAACGAACG CGGCCAGATT
GTGGCCCGCA ACACTATTGC CCTTGCCAAA GACCTGCACA TGCAGATCGT GGCTGAAGGC
GTTGAAACCC TTGATCAGGC CCGCTTTCTG CTCAGTTGCG GCTGCAACTG CGCCCAGGGC
TTCTACTATT CCCAGCCGCT GGACCAGGAC GCCTTTGAGG TGCTTTCCTT TATTCAGGAA
AAAGCCTTCT GGGTGGACCC CCAGCTGGCC AACGACGCCC GCAATCTGGG CCTGCCCCTC
AGCGACGAAA AGCCTTTTTA CGATTTCTAG
|
|---|
| Protein sequence | MKNKPAPTDI KKNFAVAPMT CLASGRMEEQ CYSGVLRSVY AEIYLLDFEK DEARELYRGD
DTLLGPSGEF TLSELFTEAL TRLVHPDDHN ALLRFWDPLS RQDLEKNGLP FSTLDVRRKC
HDLSYRWTRI TAFPVRQPGG HFVYLVCVQD VDDLKRAATI VRENELLQQQ KLDNLRYKAV
VDHTRTLVFE WRNNDLTYIS PRIGELLAGN YDGRIPFDVW REDNVLYSGD SAAFDTCLSR
LALGIRSGEM TLRLRRRDGQ FIWCKVTYTC LADDSPGERY IGTINDVDAA TRTEQALRLR
AEHDPLTGAY NTQTFFEKVE ALLREYPTEP YAVLRFDVAG FKAINEAFSL EEGNRLLRAI
ARLIRQRINT QCEAYARLTA DVFAVCITGD INRIKNFIHS LSRRLEHYSD TFRVKLFFGV
CQVENRRTPA HVLCDWAYLA QKTIKGSDLA NYAFYDNALR QRLHDESYIT DQMYRALEQK
QFKLYLQPKV ELSSGRIVGA EALVRWQHPH DGLILPGRFV PLFERNGFIV RLDEYIWDLT
CQNLRMWLDK GYKPMPVSVN MSRLHFNDGA LTKKLVQLVD KYRLPRHLLE LELTESAFFK
NEKALIHIMC ELQAEGFIFS MDDFGTGYSS LSTLRALPFN IVKLDRAFIS DGTDNERGQI
VARNTIALAK DLHMQIVAEG VETLDQARFL LSCGCNCAQG FYYSQPLDQD AFEVLSFIQE
KAFWVDPQLA NDARNLGLPL SDEKPFYDF
|
|---|
| |