Gene Ddes_1606 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDdes_1606 
Symbol 
ID7285305 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 
KingdomBacteria 
Replicon accessionNC_011883 
Strand- 
Start bp1932364 
End bp1933032 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content56% 
IMG OID643582415 
ProductSel1 domain protein repeat-containing protein 
Protein accessionYP_002480183 
Protein GI220904871 
COG category[R] General function prediction only 
COG ID[COG0790] FOG: TPR repeat, SEL1 subfamily 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.566545 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAAAT ATTATGGGGT GATCGTTCTG GCTCTGGCGC TTTTTCTGTT CCAGGGCATG 
ACTGTAAGCG CTCAGCCGAC GGATCAGGTA GAGCAAAAAC TCAACGAAGC GTGGGTGGCC 
TACAATATCG GGCAGTACAA AAAGGTGTTG CAACTGGTGC AGCCTCTTGC CTCTGACGGC 
AACGCCCGTG CCCAGATCAT CCTTGGCCGT TGCTATGAAA ACGGGCTTGG TGTGCCGCAG 
GATATGGAAA CCGCCGCCAA GTGGTTCCGT CTTGCCGCCG AGCAGAACAA CAGCGAGGCC 
CAGGTGCTGC TGGCGTACCA GTATGAACTG GGCCAGGGCG TGCCCAAAGA CGATGCCGCC 
GTAGTCAGGC TTATGACCAG CGCCGCCAAT GCGGGCAATG CCGAAGCCCT GTTCAATCTG 
GCGCTGTACC ACGGGCAAGG CAAGTACGGC TTTGCCAAAA ATCCCGCCGA AAGCTTCCGT 
CTGGCAAAAA TGGCGGCAGA TCAGGGCAAT GCCCAGGCAC AGCGCTATGT GGGTGCTTGC 
TATGAATACG GCGTGGGTGT GCCGGAAAAC GCCACCGAAG CGCAGGTGTG GTATGGCAAG 
GCCAAAGCGC AAGGCCTGGA AATAGAAGGC AATGTCTTTA ATTTTGTGCG CGAATACACC 
ATGCCGTAA
 
Protein sequence
MKKYYGVIVL ALALFLFQGM TVSAQPTDQV EQKLNEAWVA YNIGQYKKVL QLVQPLASDG 
NARAQIILGR CYENGLGVPQ DMETAAKWFR LAAEQNNSEA QVLLAYQYEL GQGVPKDDAA 
VVRLMTSAAN AGNAEALFNL ALYHGQGKYG FAKNPAESFR LAKMAADQGN AQAQRYVGAC 
YEYGVGVPEN ATEAQVWYGK AKAQGLEIEG NVFNFVREYT MP