| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ddes_1588 |
|---|
| Symbol | |
|---|
| ID | 7285286 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011883 |
|---|
| Strand | - |
|---|
| Start bp | 1908906 |
|---|
| End bp | 1910096 |
|---|
| Gene Length | 1191 bp |
|---|
| Protein Length | 396 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 643582397 |
|---|
| Product | tryptophan synthase subunit beta |
|---|
| Protein accession | YP_002480166 |
|---|
| Protein GI | 220904854 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0133] Tryptophan synthase beta chain |
|---|
| TIGRFAM ID | [TIGR00263] tryptophan synthase, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00363039 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAACA GATATTTTGG TGAATTCGGC GGCTGCTTTG TGCCCGAATT GCTCATGCCG
CCGCTTATGG AGGTCGAGGC GGCCATGCAC GACATTTATC CCACAGAGGC CTTTCAGGCT
GAACTGGAAA GCCTCCTGCG CAATTATGCC GGGCGTGAGA CACCGCTGAC CCATTGCCCG
ACCCTGTCGC GGGAACTGGG CTTTGACCTC TGGCTCAAGC GTGAGGACCT GTTGCATACA
GGGGCGCACA AGATCAACAA TACCCTGGGG CAGGCGCTGC TTGCCAGGCA TATGGGCAAG
ACGGCCCTGG TGGCTGAAAC CGGAGCCGGG CAGCACGGTG TTGCCACCGC GGCCTCCGCG
GCCCGCCTGG GTATGGAATG CACCATTTAT ATGGGTGCGG AAGATGTGGA GCGGCAAGCC
CCCAACGTCA TGCGCATGAA GCTGCTCGGG GCCACCGTGC ACGCGGTGGA AAGCGGTACG
CGCACCCTCA AGGATGCCAT TAACGAAGCC CTGCGCGCCT GGATAGGCAG CCAGAAAACA
ACTCATTACT GCTTTGGAAC AGCTGCAGGG CCACATCCTT TTCCGCTGTT GGTGCGTGAG
CTGCAAAGCG TCATAGGGCG CGAAACACGC GCCCAGATGC TGGGAAAAAC CGGCAGGCTG
CCTGATGCCA TAGTGGCTTG CGTGGGCGGC GGGTCCAATG CCATCGGCAT GTTTTATCCT
TTTCTCGACG ATGCCGCAGT GCGCATTGTG GGCGTAGAGG CAGCAGGTAC CGGCGAGCCG
GGCTGCTTCA ACTCCGCGCC GCTCAACCTC GGCGTTCCCG GTGTGCTGCA CGGCGCGTAC
AGCATGCTTT TGCAGAATGA TGACGGCCAG GTGGAGCCTT CACATTCCAT TTCCGCCGGT
CTGGATTATC CGGGCGTTGG TCCCGAGCAC TCCTGGCTGC ACAAAACGGG CCGCGTCCAC
TACGGCATGG TTAAAGACGG CAACGCACTT GCGGCCTTTC AGCGACTATG CCGCGCCGAG
GGCATCCTGC CTGCCCTGGA ATCTTCACAT GCGCTGGCCT GGGTGCTGGA TCATCCGCAT
GAGTTCAAGC CCGGCCAGCA GGTGGTGGTC AACCTTTCGG GCCGCGGTGA CAAGGATCTT
GGCATTATCA ACAAGGCCCT GGGTTTTGCC CTGGGGCAGG ACGAGGTGTA G
|
|---|
| Protein sequence | MKNRYFGEFG GCFVPELLMP PLMEVEAAMH DIYPTEAFQA ELESLLRNYA GRETPLTHCP
TLSRELGFDL WLKREDLLHT GAHKINNTLG QALLARHMGK TALVAETGAG QHGVATAASA
ARLGMECTIY MGAEDVERQA PNVMRMKLLG ATVHAVESGT RTLKDAINEA LRAWIGSQKT
THYCFGTAAG PHPFPLLVRE LQSVIGRETR AQMLGKTGRL PDAIVACVGG GSNAIGMFYP
FLDDAAVRIV GVEAAGTGEP GCFNSAPLNL GVPGVLHGAY SMLLQNDDGQ VEPSHSISAG
LDYPGVGPEH SWLHKTGRVH YGMVKDGNAL AAFQRLCRAE GILPALESSH ALAWVLDHPH
EFKPGQQVVV NLSGRGDKDL GIINKALGFA LGQDEV
|
|---|
| |