| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ddes_1426 |
|---|
| Symbol | |
|---|
| ID | 7285122 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011883 |
|---|
| Strand | - |
|---|
| Start bp | 1706598 |
|---|
| End bp | 1708634 |
|---|
| Gene Length | 2037 bp |
|---|
| Protein Length | 678 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 643582235 |
|---|
| Product | excinuclease ABC subunit B |
|---|
| Protein accession | YP_002480006 |
|---|
| Protein GI | 220904694 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0556] Helicase subunit of the DNA excision repair complex |
|---|
| TIGRFAM ID | [TIGR00631] excinuclease ABC, B subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGACA AGTTAACCAC CCCGTTCAGC CTGGAAACCG CCTATGCGCC TACGGGTGAC
CAGCCCGGGG CCATCAATGA ACTGGTGGCC AACCTTCAGG CCGGAGTACC CGCTCAGGTG
CTGCTGGGCG TTACCGGCTC GGGCAAAACG TTTACCATGG CCAATGTCAT TGCCCGTTGC
AATCGCCCGG CGCTGGTGCT TGCGCCCAAT AAAACCCTGG CGGCCCAGTT GTACGGTGAG
TTCCGCGCGC TTTTTCCCCA CAACGCCGTA GAATATTTTG TCAGCTATTA CGATTATTAC
CAGCCGGAAG CCTATGTGCC TGCATCGGAT ACCTATATTG AGAAAGATTC TTCCATCAAC
GATAACATAG ACAAGCTGCG CCATGCCGCC ACGCATGCCC TGCTGACCAG ACGCGATGTG
ATCATTGTGG CCTCTGTTTC ATGCATCTAC GGTCTTGGTT CGCCGGAATA TTACGCCAAG
ATGGTCGTTC CTGTTGAAGT GGGCCAGCAT TTTTCCATGG ACAGGCTCAT CACGCGGTTG
GTGGAAGTGC ATTATGAGCG TAATGACTAT GACTTTCATC GCGGTACGTT CCGCGTGCGC
GGCGATGCCC TTGAAATTAT TCCGGCCTAT CATCACGAAC GCGCCCTGCG GCTGGAATTT
TTTGGCGACG ATATTGATTC CATGCGCGAA ATAGATCCTC TCACGGGCGA GGTTCTGGCT
GATGTGAGTA AAACCGTTAT CTACCCGGCC AGCCACTTCG TCTCCGCGCA GGACAATCTC
AAGCGTGCCG CCGGCGACAT TCGCGATGAA CTGGCCGAGC GCCTGACCCT GTTCAGACAG
CAGGGCAAGC TGGTGGAAGC CCAGCGCCTT GAGCAGCGCA CACAGCTTGA TCTTGAAATG
ATCGAAGAGC TTGGCTACTG CAACGGCATT GAAAACTACA CCCGTCATCT GGACGGCCGT
GTGGCGGGTG AGCCGCCATC CTGCCTGCTC AACTATTTTC CTGAGGATTT TCTTCTTTTT
GTGGACGAAT CGCATATCAC TATCCCCCAG GTGGGGGGCA TGTACAAAGG CGACCGCTCA
CGCAAGCAGA CGCTGGTTGA CTACGGTTTT CGCTTGCCTT CCGCTCTGGA TAACCGCCCC
CTGCAATTCA ACGAATTTAC GGCGCTGCTC AATCAGGTGG TTTACGTGTC GGCCACCCCC
GGAAAATACG AAATGGATCA GGCCCAGGGC ATTGTGGCCG AGCAGATCAT TCGCCCCACA
GGCCTTGTGG ACCCTATGGT GGAAGTGCGC CCCACCAAGG GGCAGATGGA AGACCTGCTT
GGCGAATGCC GGGGCTGCGT GAGCCGGGGC GAAAGGGTGC TTGTGACTAC CCTGACCAAA
CGCATGGCCG AAGATCTTAC AGAGTACTGC TGCAATATGG GAGTGCGGGC GCGCTACCTG
CACTCGGATA TTGATACCCT TGAGCGCATG CAGATCATCC GTGCCCTGCG CCTGGGCGAG
TTCGACGTGC TGGTGGGCAT CAACCTGCTG CGTGAAGGAC TGGATATTCC CGAAGTTTCC
CTGGTCTGCA TTCTGGATGC GGACAAGGAA GGTTTCTTGC GTTCCACCGG TTCGCTTATC
CAGACATTTG GCCGCGCAGC CCGTAACGTT CAGGGGCGGG TCATCCTGTA TGCCGACAAG
GTAACGGACT CTATGAAGGC CGCCATGAGC GAAACGGCGC GCCGCCGTAC CCGGCAGACA
GAGTATAATG AAGAACACGG CATAACACCT GTAAGTACAA GAAAAAGCCT TGAATCCCCG
CTGGATAGTT TGTATGTGGA AGATGGCGCC TCACGCGGGC GCGGCAAGGG GCGGGGTAAG
AGCAAAGGGC AGGATGCGGA CGCAAGCCCG CTTACGGCCG AAGACACGGC CCTGCTGGTG
GCCAGGCTTG AAAAGGAAAT GCGCCAGGCT GCCCGTGATC TGGAGTTTGA ACAGGCGGCA
CAATTGCGTG ACCGCATCCG CGTCTTGCGG GCGCGTCTTA TTGCATTACC GGATTAA
|
|---|
| Protein sequence | MEDKLTTPFS LETAYAPTGD QPGAINELVA NLQAGVPAQV LLGVTGSGKT FTMANVIARC
NRPALVLAPN KTLAAQLYGE FRALFPHNAV EYFVSYYDYY QPEAYVPASD TYIEKDSSIN
DNIDKLRHAA THALLTRRDV IIVASVSCIY GLGSPEYYAK MVVPVEVGQH FSMDRLITRL
VEVHYERNDY DFHRGTFRVR GDALEIIPAY HHERALRLEF FGDDIDSMRE IDPLTGEVLA
DVSKTVIYPA SHFVSAQDNL KRAAGDIRDE LAERLTLFRQ QGKLVEAQRL EQRTQLDLEM
IEELGYCNGI ENYTRHLDGR VAGEPPSCLL NYFPEDFLLF VDESHITIPQ VGGMYKGDRS
RKQTLVDYGF RLPSALDNRP LQFNEFTALL NQVVYVSATP GKYEMDQAQG IVAEQIIRPT
GLVDPMVEVR PTKGQMEDLL GECRGCVSRG ERVLVTTLTK RMAEDLTEYC CNMGVRARYL
HSDIDTLERM QIIRALRLGE FDVLVGINLL REGLDIPEVS LVCILDADKE GFLRSTGSLI
QTFGRAARNV QGRVILYADK VTDSMKAAMS ETARRRTRQT EYNEEHGITP VSTRKSLESP
LDSLYVEDGA SRGRGKGRGK SKGQDADASP LTAEDTALLV ARLEKEMRQA ARDLEFEQAA
QLRDRIRVLR ARLIALPD
|
|---|
| |