| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_3743 |
|---|
| Symbol | |
|---|
| ID | 3758730 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007519 |
|---|
| Strand | + |
|---|
| Start bp | 3698136 |
|---|
| End bp | 3698789 |
|---|
| Gene Length | 654 bp |
|---|
| Protein Length | 217 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 637784665 |
|---|
| Product | amino acid ABC transporter permease |
|---|
| Protein accession | YP_390231 |
|---|
| Protein GI | 78358782 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.870157 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTACTTCG AATTTTCTGC CATACCGAAG TACCTGCCCT ATTTTTTGCC TGCCGCGTGG
ATGACGCTGC AGGTGACAAC GCTCGGCATT CTGCTGGGCT TTGTGCTGGG GCTGGGTACC
TCTTTTCTGC GCATTTCCGA CAAAAAGATT CTCAACCTGC CCGCCAGGGC CTACATATAT
CTCATCAGAG GAACCCCGCT GCTTCTGCAG CTGCTGTTCA TCTATTTCGG GCTGCGCAGT
CTGGCCGGTC TGGAAGCAAT AACCTCTGCA GTGCTGGCGC TTGGTATCCA TAACGGCGCA
TACATAGCGG AAATATTCCG CGGAGCCATC AGCTCCATCT CCACCGGCCA GATGGAAGCC
GCCCGCAGTC TGGGCATGTC CTACCCGCGG GCCATGGTGC GCATTATTCT GCCGCAGGCG
CTCAAGCGGG CCATTCCGCC GCTGGGCAAC CAGTTCATCA TCGCGCTTAA AGATTCCTCA
CTGGCCAGTA CCATCACCAT CAACGAACTG CTGCTCAAGT CGCAGCAACT CGCCTCGTCC
AATTTCATGA TGATGGAAAT GCTTGCCATC GCGGCACTGT TTTACCTGCT GTATACCGCG
GTGTTCAGCT GGCTGTTCCA CAGGCTTGAA GCAAAACTCG ATACTGGCAG TTAA
|
|---|
| Protein sequence | MYFEFSAIPK YLPYFLPAAW MTLQVTTLGI LLGFVLGLGT SFLRISDKKI LNLPARAYIY
LIRGTPLLLQ LLFIYFGLRS LAGLEAITSA VLALGIHNGA YIAEIFRGAI SSISTGQMEA
ARSLGMSYPR AMVRIILPQA LKRAIPPLGN QFIIALKDSS LASTITINEL LLKSQQLASS
NFMMMEMLAI AALFYLLYTA VFSWLFHRLE AKLDTGS
|
|---|
| |