| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_3170 |
|---|
| Symbol | |
|---|
| ID | 3758145 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007519 |
|---|
| Strand | - |
|---|
| Start bp | 3157353 |
|---|
| End bp | 3158417 |
|---|
| Gene Length | 1065 bp |
|---|
| Protein Length | 354 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637784081 |
|---|
| Product | ribosome-associated GTPase |
|---|
| Protein accession | YP_389659 |
|---|
| Protein GI | 78358210 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1162] Predicted GTPases |
|---|
| TIGRFAM ID | [TIGR00157] ribosome small subunit-dependent GTPase A |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.519127 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGCAGG CGCAATGCGA TCTCGCCCGT CTGGGATGGG GGCCTTTTTT TCAGCAGCAG
CTGAGTATTG AAGAGTGGGA GGAGGCTCTG CCCGCGCGCG TGGCGGGGCT GAATCGTCAT
ATACTGGGTC TTGTGACGGA AAACGGTCCG GTTCAGGCGG CTGTGCCGGG CAGCTGGTAC
ACCGGCGGGC CGGAAGACGT GCCCACAGTG GGCGACTGGC TGCTGCTGGA CCGCCGGACA
AGCCAGCCGG TGCGCCTGCT GGAGCGTAAA AGCTTTCTGC ACCGCAGAGC GGCGGGGCGC
GAGGCAAAAA TTCAGGCGCT GGCAGCCAAC ATAGATACAC TGTTCATAGT TACTTCATGC
AACGATGATT TCAATCCTTC GCGCATAGAA CGGTATCTTA CACTTGCCAT GGGATCGGGG
GTGACACCGG TTCTTGTTAT TACCAAGGCT GATCTGGTTG CTGATGCGGA TGAATTCATC
GGGCGGGCAA AAGCCATCAG GCAGGATCTG GACGTGTGCG TGCTCAATGC TCTGGATGCC
GGTTCTGCGG CCGTTCTGGA AAACTGGTGC GGCAAAGGGC AGACTCTGGC GCTTGCAGGG
TCGTCGGGTG TGGGCAAGTC TACGCTGGTC AACACCCTGC AGGGAGAGCA TATCCAGTCC
ACCGGTGCCA TACGGGAACA CGATGCCAGA GGGCGCCACA CTACCACCGG ACGCAGTCTG
CATATGCTGC CTTCCGGAGC TGTTCTCATT GATACTCCGG GCATCCGCGA GCTGCAGCTT
GCCGATGTCG GACAGGGACT GGCATCGGCA TTTGACGATA TCGAGCAGCT GGCCGCGGGG
TGCCGTTTCA ATGACTGCAC CCACGACCAT GAGTCCGGCT GTGCTGTTCA GGCTGCGGTG
CTCAGCGGCG AGCTGGAACT GCGCAGGCTT GAAAACTACC GCAAAATAAG GGCTGAGCAG
CAGCACAATG CGCTGAGCGT GGCGGAAAAA AGGGACAAGG CCCGGAAGTT CGGCAAGATG
TGCCGGAACG CCGTGGCCAT GCAGCGGAAA AAACGCCTGC GGTGA
|
|---|
| Protein sequence | MMQAQCDLAR LGWGPFFQQQ LSIEEWEEAL PARVAGLNRH ILGLVTENGP VQAAVPGSWY
TGGPEDVPTV GDWLLLDRRT SQPVRLLERK SFLHRRAAGR EAKIQALAAN IDTLFIVTSC
NDDFNPSRIE RYLTLAMGSG VTPVLVITKA DLVADADEFI GRAKAIRQDL DVCVLNALDA
GSAAVLENWC GKGQTLALAG SSGVGKSTLV NTLQGEHIQS TGAIREHDAR GRHTTTGRSL
HMLPSGAVLI DTPGIRELQL ADVGQGLASA FDDIEQLAAG CRFNDCTHDH ESGCAVQAAV
LSGELELRRL ENYRKIRAEQ QHNALSVAEK RDKARKFGKM CRNAVAMQRK KRLR
|
|---|
| |