| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_2598 |
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| Symbol | |
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| ID | 3757620 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007519 |
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| Strand | - |
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| Start bp | 2616173 |
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| End bp | 2618782 |
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| Gene Length | 2610 bp |
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| Protein Length | 869 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637783499 |
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| Product | ribonuclease R |
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| Protein accession | YP_389089 |
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| Protein GI | 78357640 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000938061 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGTAAAA AGAAAAGAAA GCAGGCCGAG AGTCTGCCTG TACGCAGCGG TGATCTGCTG
CAACTGTTCA AGGACGAAAA ACGCCCTCTT AAACTGCAGG ATTTCTTCCG GCTGCTGGGA
CTGAGCAAAA GCTACAGGGC GGCGCTGGAG GAAGCGCTGG AAGACCTGCG GGCCAAAGGG
CGCATTCTGC AGCTGCGCGG CGGCTCGTGG GGTCTGGCGG AACAGTTGAA AATGGTTACC
GGCACGCTGG AAGTGCAGCG CTCAGGAGTG GGCTTTGTTT TGCCCGAAGA CAAGCGCCGG
GCCGATATTT TTATCAGTCC CGCGCAGATG GGGCAGGCAT GGCACGGTGA CAAGGTTATG
GTGGCGCTGC TTTCCGAGCG GGCAGGCAGA AAACCCGAAG GCCGTATTGT GCGCGTACTT
GAACGCGGGC ACGAGATTGT ACCCGCCCGT GTGGTCAAGC TGATGGGCAA AGCCGGTGTG
CTGGCGCAGC CTGCCGACAC ACGTCTTAGG TTCAGCATGC TTGTCAGCAG GGGGGCTCTG
GACGGCAAAC CGCGTAAAAA CGAGCTGTTG CTGGTCGAAC CGGGCGAACG GCTGGAACCC
AACCTGTGGT CCGGTGTGGC CGTTGAAAGT CTGGGTGTGG AAGAGGATGT TTCCACACAG
GAAGTGCTGG TCAAGCTGAA TCATAACGTG CCCACGGAGT TTCCGCAGGA GGTTCTGGAT
CAGGCCGCGG CATTGCCCGA CCAGCCATCC GAGGACGATT TCGCCGGTCG TGTGGATTTG
CGGCATGTGG ATTTCGTGAC CATAGACGGT GCCAAAGCCC GCGATTTTGA CGACGCCGTC
TATGTGGAAG AGCAACACGA CGGCTGGCGG CTGTGGGTGG CCATAGCGGA TGTGAGCCAT
TATGTGCAGC CGCGCACCGC ACTGGACGAG GAAGCGCTGA CCAGAGCCAA CTCATATTAT
TTTCCGCAGT CTGTCGAGCC CATGTTTCCC GAAGCGCTTT CGAACGGATT GTGCAGCCTC
AATCCGCGGG TGCCGCGTCT TGCCATGGTG GCCGAGGTGT ATTTTTACGC CGACGGAACT
CCGGGCAAAA GTCGCTTTTA TCCCGCTGTT ATTGAAAGCA AGGCACGCCT TACCTACGGG
CAGGTGAACA GGGCCGTGCT GCAGAAAGAC CCGCACGAGC GCAAGCTGCT GGGGCCTGTG
CTGCCCATGC TTGAACAGGC GGAGCAACTG GCGCGCGTGC TCAAGCGCAG GCGGCGTGAC
AGGGGGTCGC TCGATTTTGA TCTGCCCGAA CCGGAAATTA TTTTTAACAT TTACGGCGAA
ACAGTCGATA TCGGCCGCCG TGTGCGCCAT TTCGGTCACC AGATGATCGA GGAATTCATG
ATAGCCGCCA ACGAGGCGGT GGCCCGTTTT CTGACGGAAA AAGAAACAGG CCTGCTGTAC
CGTGTGCACC CTGCGCCGGA CATTGACAAG CTGGAGAATT TCTTCAAGCT CATGCGCGGC
ACGGCGCTGG CGCACAAGGT GCCGCCTCAG GCCGGTGCCG CCCAGCTGCA GACGCTGCTG
CATGCGGCCG AAGGAACAGA GCAGGAGTTT CTGGTAAACA GGCTGGCACT GCGCACCATG
ATGCAGGCAC GGTATACACC GGACCTGGAA GGCCACTTCG GTCTGGCATC AGAGTGTTAC
TGCCATTTCA CCTCTCCCAT CCGCCGTTAT GCCGATCTGG TGGTGCACAG GGCGCTTAAG
CACGCGCTGG GACTTGCCGG TGCCACGCCG CCGCCTGCGC CGCGCACGCT GCTGCGTATC
GGCGATCAGC TGAATATCCG CGAAAGGGCG GGTATGGAAG CAGAGCGGGA AATTTTAAAA
CGTATCACCG TGCTGTACCT GCGTGACCGT GTGGGCGAGG AATTCAGCGG TGTTATTTCC
GGTGTTTCCG ATTTCGGCTT CTGGGTGGAA CTCGGTGAGG TCATGGCGGA AGGACTTGTG
CGTCTTTCTC TGCTGCATGA CGATTACTAT GAGTTCATCC CCGAACGTCA GGAGCTGATG
GGCGAGCGTA CGGGAAGAAC CTTCCGGCTG GGTCAGAGCG TGCGGGTGCT GCTTTCCGGC
ATCAATGTAC CCCGGCTTGA GGTTGACCTT GAACTGCTGG AGCATGAAGA CAGCCGTGTG
CCGCAGCGTA AAGAGGGAAA CCGTTCCGCA GAGCGTGACC GGCGCCGTGG CGGTTCCGGT
GACAGGAAAG GTATGACCGT TGCCGCGCAG GCCCGCAAGG CGGAAGCACG CCTGAGGGCG
CAGGGCGGGG CACCGCAGGA GCACGAAGAC TTTCAGGCCC CCGCAGCGCA GTCCGGTGAT
GCGGATGTGC TGGTACGTGC CGAGGATGGT TCCTTGATTG TTGCCGATGA TGCAGATGAC
CGCCCCGCCG CCAGCGGCAA GCCCGCACGT GGCAGGTCAC GTCGTTCTTC CGGAGGCAGG
ACCGGCAAAA AAACGGCCGG AGCTTCAGGC AATTCCGCAG GCGGTAAAAA CGCAAAACGC
GGCGCGCGTC CCGCAGCCGC CGGAGCAAAG AAGAAAAAAC CAGCCGCGAG GCCTGAAAAG
GCGGGCGGTA CAAAGAAAAA AACTGCCTAG
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| Protein sequence | MGKKKRKQAE SLPVRSGDLL QLFKDEKRPL KLQDFFRLLG LSKSYRAALE EALEDLRAKG
RILQLRGGSW GLAEQLKMVT GTLEVQRSGV GFVLPEDKRR ADIFISPAQM GQAWHGDKVM
VALLSERAGR KPEGRIVRVL ERGHEIVPAR VVKLMGKAGV LAQPADTRLR FSMLVSRGAL
DGKPRKNELL LVEPGERLEP NLWSGVAVES LGVEEDVSTQ EVLVKLNHNV PTEFPQEVLD
QAAALPDQPS EDDFAGRVDL RHVDFVTIDG AKARDFDDAV YVEEQHDGWR LWVAIADVSH
YVQPRTALDE EALTRANSYY FPQSVEPMFP EALSNGLCSL NPRVPRLAMV AEVYFYADGT
PGKSRFYPAV IESKARLTYG QVNRAVLQKD PHERKLLGPV LPMLEQAEQL ARVLKRRRRD
RGSLDFDLPE PEIIFNIYGE TVDIGRRVRH FGHQMIEEFM IAANEAVARF LTEKETGLLY
RVHPAPDIDK LENFFKLMRG TALAHKVPPQ AGAAQLQTLL HAAEGTEQEF LVNRLALRTM
MQARYTPDLE GHFGLASECY CHFTSPIRRY ADLVVHRALK HALGLAGATP PPAPRTLLRI
GDQLNIRERA GMEAEREILK RITVLYLRDR VGEEFSGVIS GVSDFGFWVE LGEVMAEGLV
RLSLLHDDYY EFIPERQELM GERTGRTFRL GQSVRVLLSG INVPRLEVDL ELLEHEDSRV
PQRKEGNRSA ERDRRRGGSG DRKGMTVAAQ ARKAEARLRA QGGAPQEHED FQAPAAQSGD
ADVLVRAEDG SLIVADDADD RPAASGKPAR GRSRRSSGGR TGKKTAGASG NSAGGKNAKR
GARPAAAGAK KKKPAARPEK AGGTKKKTA
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