| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd703_3977 |
|---|
| Symbol | |
|---|
| ID | 8087367 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya dadantii Ech703 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012880 |
|---|
| Strand | - |
|---|
| Start bp | 4613028 |
|---|
| End bp | 4614533 |
|---|
| Gene Length | 1506 bp |
|---|
| Protein Length | 501 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644838073 |
|---|
| Product | D-ribose transporter ATP binding protein |
|---|
| Protein accession | YP_002989552 |
|---|
| Protein GI | 242241371 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1129] ABC-type sugar transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.443134 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAACCTT TACTGCAACT GCAAGGTATC ACCAAATCGT TTCCTGGCGT GAAGGCATTG
GCTGGCGCTG CGCTCAATGT CTATCCGGGA AAGGTGATGG CGCTGGTGGG CGAAAACGGC
GCCGGTAAAT CCACCATGAT GAAAGTGCTG ACCGGGATTT ATCGTAAGGA TGCCGGCAGT
ATCCATTTTA TGGGTAAAGA GGTGGATTTC AGCGGCCCTA AAGCCTCTCA GGAAGCGGGT
ATCGGTATTA TCCATCAGGA ACTGAACCTG ATTCCCCAGA TCAGCATCGC GGAGAATATC
TTTCTCGGAC GCGAATTTAC CCATCGCATT GGCCGTATCG ACTGGCCGCG GATGTATGCC
GAAGCGGATA AGCTGTTGGC GCGTCTGAAT CTGAACTACG ACAGCCGGCG TCTGGTCGGG
GAGCTGTCCA TCGGCGAGCA GCAGATGGTC GAGATTGCCA AAGTGCTGAG CTTTGAATCC
AAAGTGATCA TTATGGATGA GCCGACGGAT GCGTTGACGG ATACCGAAAC GGCATCGTTA
TTCAGTGTGA TCAAAGAGTT GCAATCGCAT GGCTGCGGCA TTGTTTATAT TTCCCACCGC
CTGAAAGAGA TTTTTGACAT CTGTAACGAC GTCACGGTGT TCCGCGACGG TCAGTTCATC
GGCGAGCGTC CGGTGCGTGA ATTGCAGGAA GATACGCTGA TTGAAATGAT GGTGGGCCGT
AAGCTGGAAG AGCAATACCC CCGGCTCGAT CAGGCGCCGG GCGATGTGCG GTTGAAGGTG
AGCGGGTTGT GCGGCCCGGG TGTGGACAAT GTCAGTTTCA CGTTGCGCAA AGGCGAGATT
CTTGGGGTCG CCGGGTTGAT GGGGGCCGGG CGAACTGAGC TGATGAAAGT GTTGTACGGT
GCGTTTCCCC GTACACAAGG CTCCGTATGG CTGGACGGCA AGGACATCAC GTCGAACAGT
GCCCAGGAAG GTCTGGCCAA CGGTATCGTT TACATTTCGG AAGACCGCAA GCGCGACGGG
CTGGTGCTCG GCATGTCGGT GAAAGAAAAC ATGTCGTTGA CCGCATTACG CTATTTCAGT
AATCAGGCCG GTTCGCTGCG CCATGAAGAC GAGCGCATCG CGGTGGAAGA TTTTATTCGT
TTGTTCAATA TCCGCACGCC ATCGATGGAC CAAACCATAG GGCTGCTTTC CGGCGGCAAC
CAGCAGAAAG TGGCGATTGC CCGCGGGTTG ATGACGCGCC CTAAAGTCCT GATTCTGGAT
GAGCCGACTC GCGGCGTGGA TGTTGGGGCG AAGAAAGAGA TCTATCAATT AATCAACCAG
TTCAAGCAAG AAGGGTTGAG CATCATTCTG GTGTCTTCGG AAATGCCGGA AGTGCTCGGC
ATGAGCGATC GCATCATTGT GATGCATGAG GGTCGCCTGA GCGGTGAATT CCCTATTGAG
CAAGCAACCC AGGAAACGCT GATGGCCGCG GCCGTTGGTA AGCAATACGG CGCAACGCAG
GAGTAA
|
|---|
| Protein sequence | MQPLLQLQGI TKSFPGVKAL AGAALNVYPG KVMALVGENG AGKSTMMKVL TGIYRKDAGS
IHFMGKEVDF SGPKASQEAG IGIIHQELNL IPQISIAENI FLGREFTHRI GRIDWPRMYA
EADKLLARLN LNYDSRRLVG ELSIGEQQMV EIAKVLSFES KVIIMDEPTD ALTDTETASL
FSVIKELQSH GCGIVYISHR LKEIFDICND VTVFRDGQFI GERPVRELQE DTLIEMMVGR
KLEEQYPRLD QAPGDVRLKV SGLCGPGVDN VSFTLRKGEI LGVAGLMGAG RTELMKVLYG
AFPRTQGSVW LDGKDITSNS AQEGLANGIV YISEDRKRDG LVLGMSVKEN MSLTALRYFS
NQAGSLRHED ERIAVEDFIR LFNIRTPSMD QTIGLLSGGN QQKVAIARGL MTRPKVLILD
EPTRGVDVGA KKEIYQLINQ FKQEGLSIIL VSSEMPEVLG MSDRIIVMHE GRLSGEFPIE
QATQETLMAA AVGKQYGATQ E
|
|---|
| |