Gene Dd703_3783 details

Gene Information

• Locus tag: Dd703_3783
• Symbol: btuB
• ID: 8087168
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dickeya dadantii Ech703
• Kingdom: Bacteria
• Replicon accession: NC_012880
• Strand: -
• Start bp: 4394343
• End bp: 4396190
• Gene Length: 1848 bp
• Protein Length: 615 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 644837874
• Product: vitamin B12/cobalamin outer membrane transporter
• Protein accession: YP_002989358
• Protein GI: 242241177
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG4206] Outer membrane cobalamin receptor protein
• TIGRFAM ID: [TIGR01779] TonB-dependent vitamin B12 receptor

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.000781057
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTTAATA AAAAAATAAC ACTGCTGACG GCGATGATGG CCACGGCATT TTCGGGGTGG 
GCGCAAGGTA GCGATAACAC ACAACAGGAC AGTGGTGACG CTATGGTCGT GACCGCCAAT 
CGTTTTCCTC AGCCGGTGTC TTCCGTGCTG GCGCCAACAA CGGTGGTGAC GCGAGATGAT 
ATCGATCGCT GGCAGTCTAA AAGCTTGACG GACGTGATGC GTCGTCTGCC GGGGGTGGAT 
ATTGCTCAAA ATGGCGGACT GGGGCAGACC AACTCGCTGT TTATTCGTGG TACTGCGTCC 
AGCCATGTTT TGGTGTTGAT TGATGGTATC CGCCTGAATC AGGCGGGGGT TAGTGGCTCT 
TCCGACATCA GCCAGATCCC GATTTCTCTG GTTCAGAAGG TGGAATATAT CCGTGGGCCG 
CGTTCTGCCG TGTATGGTTC TGACGCGATT GGCGGGGTCA TCAATATCAT CACGACGCGC 
GAGAAGAACG GTACGACGCT TTCTGCCGGG ATGGGTTCCA ATGGCTATCA AACCTATGAT 
GCTTCCACCC AGCAGAATCT GGGGAGCCGT ACTGTAGGGA CGTTTGCTGG TAATTATACC 
TATACCAAAG GGTTTGATGT GGTGGCCAAC CTGCCTGATG CCTATGGTAC CTCGGCCCAG 
CCGGATCGTG ACGGTTTCAT GAGCAAAGCG GTGTACGGCA ATGTAGAACA CCAGTTTAGC 
GATGCAGTAA GCGGCTTTGT GCGCGGCTAT GGTTTCGATA ATCGTACTGC TTATGACGGT 
TCCCCCTGGG ATTTACGCCA GCTTTATAGC CAGACCTGGA ATACCGGGTT GCGTTACCAG 
AGAGGGATTT GGGCTTCGCA ATTGATTACC AGTTATAGCC ACAGTAAGGA CTACAACTAC 
GATCAATTGG GCGGCCGTTC CAGCAGCTGG GCCACGCTGG ACGACATACA GCAGTACAAC 
GTGCAGTGGG GCAACAGCGT TCAGGTTGGT AAAGGCAATA TCAGTACCGG CGTTGACTGG 
CAGAAGCAAA CGACTACGCC GAACACCAAT TTCGTCGAGC GAGGGTCTGA ACTCCGCAAT 
ACCGGGGTGT ATGCGACCAC TCAGCAATTG CTGGGGCCGG TAACGCTCGA AGGATCGTTG 
CGTAGTGATG ACAATTCGCA ATTCGGACAA CATTCTACCT GGCAAACCGG GACTGCGTGG 
GAGTTCACTC AAGGATATAG GCTGTTGGCG TCTTACGGCA CCGCATATAA GTCACCTAAT 
CTTGGGCAAT TATATGGCTC CATCGGTAAT GCCAACCTGA AGCCGGAGGA AAGCAAACAG 
CTGGAAGGTG GAATTGAAGG CCTGACCGGA GCGGTCAACT GGCATGTGTC CGCTTATCGT 
AATGACGTGG ACAACCTGAT TCAGTACGAC AGCGTCAACA GTCGGTATTT CAACATTGGT 
AAAGCGCTCA TTAAAGGGAT TGAAACCACT GCGTCGTTTG ATACAGGGCC TGTTGCACAT 
AAATTGTCCT ACGACTATAT CGATGCCAGA AATGCGGAAA CGAATGAACG CCTGACAAGA 
AGAGCCCGCC AGCAGTTTAA ATATGATTTG GATTGGCGCT GGGAGCCCTT GGATTGGACG 
GTGACTTATC ACTATCTGGG TGATCGTACC GATCAGGATT TTAATACCTT TGAAACGATG 
AAGCTGGGTG GTGTTAGCGT TTGGGATCTG GCGGTGTCAT ATCCAGTCAC CTCTCACCTG 
ACAGTTCGTG GTAGAATCGC CAACCTGTTC GATAAGAATT ATGAGACAGT GTATGGCTAC 
CGAACCGCAG GTCGAGAATA TTATCTCACC GGAAGCTATA GTTTCTGA 

 

Protein sequence

MLNKKITLLT AMMATAFSGW AQGSDNTQQD SGDAMVVTAN RFPQPVSSVL APTTVVTRDD 
IDRWQSKSLT DVMRRLPGVD IAQNGGLGQT NSLFIRGTAS SHVLVLIDGI RLNQAGVSGS 
SDISQIPISL VQKVEYIRGP RSAVYGSDAI GGVINIITTR EKNGTTLSAG MGSNGYQTYD 
ASTQQNLGSR TVGTFAGNYT YTKGFDVVAN LPDAYGTSAQ PDRDGFMSKA VYGNVEHQFS 
DAVSGFVRGY GFDNRTAYDG SPWDLRQLYS QTWNTGLRYQ RGIWASQLIT SYSHSKDYNY 
DQLGGRSSSW ATLDDIQQYN VQWGNSVQVG KGNISTGVDW QKQTTTPNTN FVERGSELRN 
TGVYATTQQL LGPVTLEGSL RSDDNSQFGQ HSTWQTGTAW EFTQGYRLLA SYGTAYKSPN 
LGQLYGSIGN ANLKPEESKQ LEGGIEGLTG AVNWHVSAYR NDVDNLIQYD SVNSRYFNIG 
KALIKGIETT ASFDTGPVAH KLSYDYIDAR NAETNERLTR RARQQFKYDL DWRWEPLDWT 
VTYHYLGDRT DQDFNTFETM KLGGVSVWDL AVSYPVTSHL TVRGRIANLF DKNYETVYGY 
RTAGREYYLT GSYSF