Gene Dd703_0552 details

Gene Information

• Locus tag: Dd703_0552
• ID: 8088878
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dickeya dadantii Ech703
• Kingdom: Bacteria
• Replicon accession: NC_012880
• Strand: +
• Start bp: 617593
• End bp: 619587
• Gene Length: 1995 bp
• Protein Length: 664 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 644834624
• Product: transketolase
• Protein accession: YP_002986185
• Protein GI: 242238004
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0021] Transketolase
• TIGRFAM ID: [TIGR00232] transketolase, bacterial and yeast

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCCTCTC GTAAAGAACT TGCCAATGCC ATCCGCGCGT TAAGTATGGA TGGTGTGCAG 
AAGGCCAAAT CTGGTCATCC GGGCGCACCG ATGGGTATGG CCGATATCGC CGAGGTTTTG 
TGGCGTGATT ACCTCAACCA TAACCCGGGC AATCCGAGCT GGGTCAACCG CGACCGCTTT 
GTCCTGTCCA ATGGTCACGC CTCCATGCTG ATCTACAGTC TGTTGCATTT GACGGGGTAT 
GATCTGCCGA TTGAAGAGCT GAAAAATTTC CGTCAACTCC ATTCCAGAAC GCCGGGACAC 
CCGGAAGTGG GTTATACGCC GGGCGTAGAA ACCACCACCG GGCCGTTGGG GCAGGGGATC 
GCCAACGCGG TCGGTATGGC TATCGCCGAA CGCACGCTGG CCGCGCAGTT TAACCGTCCG 
GGCCATGACA TCGTCGATCA CCATACTTAT GCCTTTCTGG GCGACGGCTG CATGATGGAA 
GGGATCTCCC ATGAAGTGTG TTCGCTGGCC GGCACGTTGA AACTGGGCAA ACTGATCGCG 
TTCTACGATG ACAACGGTAT TTCCATCGAT GGTCATGTTG ACGGCTGGTT CACCGATGAT 
ACCGCCGCCC GCTTCGAATC CTATGGTTGG CAGGTTATTC GCGGCATTGA CGGCCACGAC 
GCCGACGCTA TTCATCAGGC CATTGCACAG GCTCAGCGTG TGACGGATAA ACCGTCCCTG 
TTGATGTGCA AAACCGTTAT CGGTTTTGGT TCTCCGAACA AGGCCGGTAC TCACGACTCG 
CACGGCGCGC CGCTGGGTGA TGCCGAAGTG GCCGCCACCC GCGAACAACT GGGCTGGAAA 
TACGATCCGT TTGAAATCCC GGCGGAAATC TATGCCGCGT GGGACGCCCG CGAAGCCGGT 
AAGCGCAAAG AAGCCGCCTG GCAGCAGGCA TTCAACGCTT ACGCCAGCGC CTACCCGGAA 
TTGGCGGCGG AGTTTACTCG TCGCAGCAGC GGTGAACTGC CTGCCAACTG GCAGCAGGAA 
TCCACGAAGG TGATTGAACA GCTGCAGGCC AATGCCGCCA AGATCGCCAG CCGTAAAGCC 
TCTCAGAACG CGCTGGAAGC TTATGGCAAA TTGCTGCCGG AATTCTTGGG CGGCTCTGCC 
GATCTGGCGC CCAGCAACCT GACTATCTGG TCTGGCTCTA AAGCGCTGAA TGAAGACCCG 
GCGGGCAACT ATATCCACTA CGGCGTGCGT GAGTTCGGCA TGACAGCGAT TGCCAACGGT 
ATCGCGTTGC ACGGCGGTTT TGTACCTTAT ACCGCGACCT TCCTGATGTT CGTGGAATAT 
GCCCGCAACG CTGTGCGTAT GGCGGCGCTG ATGAAGGTTC GCAGCATTTA TGTCTACACC 
CATGACTCTA TCGGGTTGGG CGAAGACGGC CCGACCCATC AGCCGGTTGA ACAGTTGGCC 
AGCCTGCGTG TTACGCCGAA CATGAGTACC TGGCGTCCGG CGGATCAGGT AGAAACCGCG 
GTGGCCTGGA AGTATGCCAT CGAGCGTAAA GACGGCCCGA CGGCGCTGAT TCTGTCTCGT 
CAGAATCTGG CTCAACAGGA GCGTACCGCT CAGCAACTGG CGGATGTCGT AAAAGGCGCA 
TACGTGTTGA AAGACAGCAA CGGTCAACCA GATGTGATCC TGATCGCGAC CGGTTCCGAA 
GTCAAACTGG CGGTTTCCGC CTGGCAGACA CTGACGGACG AAGGCATCAA GGCTCGCGTG 
GTTTCCATGC CGTCCACCGA TGCTTTCGAT AAGCAGACTT CTGCTTACCG CGAAGCGGTG 
TTGCCGTCTT CGGTAAGCGC CCGTGTGGCG ATCGAAGCCA GCATCGCTGA TTTCTGGTAC 
AAGTATGTCG GCTTGAACGG CGCCATCGTT GGCATGGAAC GCTTCGGCGA ATCCGCACCT 
GCGGAGAAAC TGTTCGAAGC GTTCGGTTTT ACCACCGATA ACGTGGTCGC TAAGGCGAAA 
GCGTTGTTGA AATAA 

 

Protein sequence

MSSRKELANA IRALSMDGVQ KAKSGHPGAP MGMADIAEVL WRDYLNHNPG NPSWVNRDRF 
VLSNGHASML IYSLLHLTGY DLPIEELKNF RQLHSRTPGH PEVGYTPGVE TTTGPLGQGI 
ANAVGMAIAE RTLAAQFNRP GHDIVDHHTY AFLGDGCMME GISHEVCSLA GTLKLGKLIA 
FYDDNGISID GHVDGWFTDD TAARFESYGW QVIRGIDGHD ADAIHQAIAQ AQRVTDKPSL 
LMCKTVIGFG SPNKAGTHDS HGAPLGDAEV AATREQLGWK YDPFEIPAEI YAAWDAREAG 
KRKEAAWQQA FNAYASAYPE LAAEFTRRSS GELPANWQQE STKVIEQLQA NAAKIASRKA 
SQNALEAYGK LLPEFLGGSA DLAPSNLTIW SGSKALNEDP AGNYIHYGVR EFGMTAIANG 
IALHGGFVPY TATFLMFVEY ARNAVRMAAL MKVRSIYVYT HDSIGLGEDG PTHQPVEQLA 
SLRVTPNMST WRPADQVETA VAWKYAIERK DGPTALILSR QNLAQQERTA QQLADVVKGA 
YVLKDSNGQP DVILIATGSE VKLAVSAWQT LTDEGIKARV VSMPSTDAFD KQTSAYREAV 
LPSSVSARVA IEASIADFWY KYVGLNGAIV GMERFGESAP AEKLFEAFGF TTDNVVAKAK 
ALLK