| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_3445 |
|---|
| Symbol | rsmC |
|---|
| ID | 8117911 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya zeae Ech1591 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012912 |
|---|
| Strand | - |
|---|
| Start bp | 3917091 |
|---|
| End bp | 3918119 |
|---|
| Gene Length | 1029 bp |
|---|
| Protein Length | 342 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 644853819 |
|---|
| Product | 16S ribosomal RNA m2G1207 methyltransferase |
|---|
| Protein accession | YP_003005736 |
|---|
| Protein GI | 251791015 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG2813] 16S RNA G1207 methylase RsmC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGCAT TAACCCCCGC CAGTGAAGTG ATACTGCGCC ATAGTGATGA ATTTGTTGCC
CGCCGGGTAC TGTTTGCCGG TGATTTGCAG GATACGCTGC CCGCACATTT TGAGGCGGCT
TCGGTGACCG TGCACACCAC GCAATATCAT CACTGGCAGC AGTTGCAGCC TGTATTGGGC
GACAACGCGC ATTTTTCGTT GCTGGCGCAG GCGGAAATGG TGGCCGGGTG TGACACCTTG
ATTTACTACT GGCCGAAGAG CAAGCAGGAA GCGCAGTTCC AACTGTCTAA TCTGCTGTCG
CTGCTGCCGG TCGGCTGTGA GATTTTTGTC GTCGGCGAGA ACCGCAGCGG TGTGCGCAGC
GCCGAGGGGA TTCTGGAGCC GATCGCCGCC ATCAATAAGA TAGACAGCGC GCGTCGCTGC
GGTTTGTATC ACGGCCGTCT GGATGCGCCC TCCGCGTTTG CACTGGAGGA TTGGTGGCAG
GAATATGATG TAGATGGCGC AACGGTTTGT ACGCTGCCGG GGGTATTCAG CCGTGATGGT
CTGGATGTCG GCAGCCAGTT GCTGCTTTCG ACGCTGGAGC CGCATCGTAA AGGTAAAGTG
CTCGATCTTG CCTGCGGCGC CGGGGTGTTG GCGGCGTCGT TTGCCCGGCT ATCGCCGAAA
ATCCGCCTGA CGCTGAGTGA TGTCGGCGCG GCTGCGCTGG AAGCCAGCCG GGCGACGCTG
GCGGCGAATG AGCTGGAAGG GCAGGTGATT GCCAGCAACG TTTACTCTGA TATTCAGGGG
CGCTTTGATT TGATTATCTC TAACCCGCCG TTCCACGACG GTATGCAAAC CAGCCTACAT
GCGGCGGAAA TGATGATTCG CGGTGCGGCT GCCCACCTCA ACATGGAAGG TGAACTGCGC
ATCGTCGCCA ACGCCTTTCT GCCGTACCCG GCGCTGCTGG ACGAGACCTT CGGCAGCCAC
GAAGTTCTCG CCCAGACCGG TCGTTTCCGC GTGTATCGCG CGGTGCTGCG TCGTAATAAA
AAACGCTAA
|
|---|
| Protein sequence | MSALTPASEV ILRHSDEFVA RRVLFAGDLQ DTLPAHFEAA SVTVHTTQYH HWQQLQPVLG
DNAHFSLLAQ AEMVAGCDTL IYYWPKSKQE AQFQLSNLLS LLPVGCEIFV VGENRSGVRS
AEGILEPIAA INKIDSARRC GLYHGRLDAP SAFALEDWWQ EYDVDGATVC TLPGVFSRDG
LDVGSQLLLS TLEPHRKGKV LDLACGAGVL AASFARLSPK IRLTLSDVGA AALEASRATL
AANELEGQVI ASNVYSDIQG RFDLIISNPP FHDGMQTSLH AAEMMIRGAA AHLNMEGELR
IVANAFLPYP ALLDETFGSH EVLAQTGRFR VYRAVLRRNK KR
|
|---|
| |