| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_1886 |
|---|
| Symbol | |
|---|
| ID | 8119363 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya zeae Ech1591 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012912 |
|---|
| Strand | - |
|---|
| Start bp | 2154132 |
|---|
| End bp | 2155295 |
|---|
| Gene Length | 1164 bp |
|---|
| Protein Length | 387 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644852277 |
|---|
| Product | type III secretion system apparatus protein YscQ/HrcQ |
|---|
| Protein accession | YP_003004215 |
|---|
| Protein GI | 251789494 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1886] Flagellar motor switch/type III secretory pathway protein |
|---|
| TIGRFAM ID | [TIGR02551] type III secretion system apparatus protein YscQ/HrcQ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGCCGC TGGCTCAAAC ACTGCGACCG GTCAGCCGGG CGCAGGCGGC CCTCTCCCGT
CAACTGGCGA CGGCGCACCG CTTCGCCTTC ATGCTGGATG GCCAGCCCGG CGAGTTGCGT
TTGCACCTGG CGCAGGAAGC CGTGCCCGAT GTGCAGGAGA GCGGCTGGCG CTGCCACGCC
GGAACGCTGT GGCTGGATAA CGCCGCCCCG TTGCTGTCGT TGTTTTCCGC CTGCCCGGCG
CTGCTGCCCG GCCCGCACGA CAGTGAAGAC GCCGTACACT GGTACTGGAC CCACTACAAC
CAGGCGCTCA GCCCGACGCT GCGCGAGCTG TTCGGCGAGT TCCAGCCGGT ATTCCCGGCG
CAAGCACACC ATTCAGCCTT ATCCGACAAT ACAGAGCAGC CAGACGATTC AGCGCCGGCC
GAGGTGACGC TGTGGTTGGA CGCCAGCCGG GGCGATTTCC GGGTGCGCAG CCGCTTGCGT
ACCTCGCACC AGACCTTGCA GCAATGGTTA AGCCGGCCGG GGTGGTCGGC CCCGCGCTAT
CCGCTGCCCG GTCATCTGGC GATAAGGGTG CCGTTAACAC TGGCGGAAGT GACGTTGTCA
CACGAACAGT TAGCCCATTT GGAACCGGGC GACCTGATCT GTCCACTCAA ACAGTACTTT
TCACCGCAGG GCGACGGCAG TATCACGCTG GCCGACCGGC GGTTGACCGG GCGGCTCAGG
ATGGACGTGC TGGCCCCTTA CTGGTTTACC GTGACAGAAC TGGAGGAATG TCCCGTGACA
ACACCTTTTG ACGACACCGC CGTTTTCGAT AATACCGCCT CTTTCGATGC CTATACCGCG
TCTGAAGCCT CGCCGTATGC GGAGTATGGC GCACCGGATG GCGACAACCC TGCCGGCGCG
TTGTCCGGTT ATGCGTTGCC GCCGCTGACG CTGGCGCTGA CCGTGCGTTG CGGCTACCTG
ACGCTGACAC TACAGGATTT GCAGCAACTC GCCCCCGGCA CGGTGCTGAC GTTGCAGCAG
GCGACGCCCG GTGAAGCCAC CCTCTATCAC GGCGAACAGC CGCTGGCATT GGGGGAACTG
GTCGATGTGG AAGGGCGACT GGGATTGCAG ATCACCCGCC GCCTCGGGGT GGATGGCGAG
ATAGCACCGG AGTCATCACG ATGA
|
|---|
| Protein sequence | MMPLAQTLRP VSRAQAALSR QLATAHRFAF MLDGQPGELR LHLAQEAVPD VQESGWRCHA
GTLWLDNAAP LLSLFSACPA LLPGPHDSED AVHWYWTHYN QALSPTLREL FGEFQPVFPA
QAHHSALSDN TEQPDDSAPA EVTLWLDASR GDFRVRSRLR TSHQTLQQWL SRPGWSAPRY
PLPGHLAIRV PLTLAEVTLS HEQLAHLEPG DLICPLKQYF SPQGDGSITL ADRRLTGRLR
MDVLAPYWFT VTELEECPVT TPFDDTAVFD NTASFDAYTA SEASPYAEYG APDGDNPAGA
LSGYALPPLT LALTVRCGYL TLTLQDLQQL APGTVLTLQQ ATPGEATLYH GEQPLALGEL
VDVEGRLGLQ ITRRLGVDGE IAPESSR
|
|---|
| |