| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_1195 |
|---|
| Symbol | |
|---|
| ID | 8118747 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya zeae Ech1591 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012912 |
|---|
| Strand | - |
|---|
| Start bp | 1356405 |
|---|
| End bp | 1357475 |
|---|
| Gene Length | 1071 bp |
|---|
| Protein Length | 356 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 644851592 |
|---|
| Product | Xylose isomerase domain protein TIM barrel |
|---|
| Protein accession | YP_003003541 |
|---|
| Protein GI | 251788820 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1082] Sugar phosphate isomerases/epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.176107 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAACAA TAAAAGGGCC GGGGTTATTT CTCGCGCAGT ATATTGGCGA ACAGGCGCCC
TTTAACTCAC TGGAAGGGCT GGCCGGCTGG GCGGCCGGCC TCGGTTTCAA GGCGCTCCAG
ATCCCCTGTA ATCACCCGCA TCTGTTTGAT CTGGAAACCG CGGCCCACAG CCAAACCTAT
TGCGACGACG TGGCCGGGCG TCTGGCGGAA TACGGGCTGG TGATTAGCGA GCTTTCCACT
CATCTTGAAG GCCAGTTGAT TGCCGTCCAC CCGGCTTACG ACCACGCCTT TAACGATTTC
GCCCCGCCCG CGGTTCGCCA CCACCACGAG GAGCGGCGGC AATGGGCGGT CAATGCCTTA
AAAAACGCGG CCGCCGCGTC GGAAAAATTG GGATTACGCG CCCATGCCAC CTTCTCCGGC
GCGCTGGCCT GGCCCTATTT CTACCCGTGG CCGCCGCGCA AGGAAGCGTT AATCAAAGAA
GCGTTTGACG AGCTGGCCCG GCGCTGGCGC CCGATTCTGG ACGTTTTTGA TCACCACGGC
GTTGACGTCT GTTACGAATT ACACCCGTCG GAAGACCTGC ACGATGGCGT CAGTTTCGAG
CGTTTTCTCC ATGCGGTTGG CGACCACCCG CGTTGCCACG TGCTGTACGA CCCGAGCCAC
ATGCTGCTAC AGCAGATGGA TTACCTCGCT TTTATCGATA TTTATCACGA CAGAATCCGG
GCCTTTCATG TGAAAGACGC TGAATTTACC CCTAATGGAA AAAGCGGTGT TTACGGTGGG
TATCAGCCCT GGACAGAACG CGCCGGGCGC TTCCGCTCAC CGGGAGACGG CCAAATAGAT
TTCAAAGCTA TTTTCAGCAA GCTGGCGCAA TACGACTACC CAGGCTGGGC AGTGCTGGAA
TGGGAGTGCT GCCTGAAAGA GGCCGAAACC GGCGCGCGGG AAGGGGCTGA ATTCATCCGC
CGTCACATCA TTCCTGTGGC CGGCAAAGCG TTTGATGACT TTGCCGCCAC CACCAACGAC
CGCCAGACCA TCAGGAACAT GCTGGGGCTG AAAGGAGAAA ACGCGTCATG A
|
|---|
| Protein sequence | MQTIKGPGLF LAQYIGEQAP FNSLEGLAGW AAGLGFKALQ IPCNHPHLFD LETAAHSQTY
CDDVAGRLAE YGLVISELST HLEGQLIAVH PAYDHAFNDF APPAVRHHHE ERRQWAVNAL
KNAAAASEKL GLRAHATFSG ALAWPYFYPW PPRKEALIKE AFDELARRWR PILDVFDHHG
VDVCYELHPS EDLHDGVSFE RFLHAVGDHP RCHVLYDPSH MLLQQMDYLA FIDIYHDRIR
AFHVKDAEFT PNGKSGVYGG YQPWTERAGR FRSPGDGQID FKAIFSKLAQ YDYPGWAVLE
WECCLKEAET GAREGAEFIR RHIIPVAGKA FDDFAATTND RQTIRNMLGL KGENAS
|
|---|
| |