| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_0642 |
|---|
| Symbol | |
|---|
| ID | 8119685 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya zeae Ech1591 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012912 |
|---|
| Strand | - |
|---|
| Start bp | 734147 |
|---|
| End bp | 734830 |
|---|
| Gene Length | 684 bp |
|---|
| Protein Length | 227 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644851031 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_003003003 |
|---|
| Protein GI | 251788282 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.222578 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGCAC AGAAACAGGC GGTGATCACC GGCAGCAGCT CCGGGATCGG CGCCGCCATT
ACCACTACGC TGTTGGCGGC GGGGTGGAAG GTTATCGGAC TGTCGCGCCA GCCCGGCCCG
CATCAGCATC CGAACTTCAC GCATTGTCCG CTGGATATCA CCGATACGCC GGCGCTCATC
ACCCTACTGG ACAGCCTGCC CGCCGTCGAT GCGGTGATTC ATGCCGCCGG GGTGATGAAA
GCCGCCACGC TGGGTGCGCT GTCCTACGCC GACAGCGAGC AGTTGTGGAA GCTGCATATT
CAGGTGGCGG AAGTGCTGGC CGACCGGCTG GTGAGCAAAC TGCCGCAGGG CGGGCGCATC
GTTCTGCTGG GCAGCCGCAC CTCCAGCGGC GCCGCCGGGC GTAGTCAGTA CGTCGCCACC
AAATCGGCGA TGATCGGCAT GGTGCGAAGC TGGGCGGCAG AGCTGGCGCC GCGCGGCATC
ACCGTGAATA TCGTGGCGCC GGGCGCCACC GAAACGCCGA TGCTGAACCA GCCGGGGCGG
CAAAGCTCGC CGCCGAAACT GCCGCCGATT GGCCGGTTCA TCCACCCGCA GGAAGTGGCG
GATCTGGTGG CCTATCTGTT GTCGCCTTCG GCGTCGGCCA TTACCGGGCA GCAGTTGGTT
ATCTGCGGCG GCGCCTCGTT ATAA
|
|---|
| Protein sequence | MSAQKQAVIT GSSSGIGAAI TTTLLAAGWK VIGLSRQPGP HQHPNFTHCP LDITDTPALI
TLLDSLPAVD AVIHAAGVMK AATLGALSYA DSEQLWKLHI QVAEVLADRL VSKLPQGGRI
VLLGSRTSSG AAGRSQYVAT KSAMIGMVRS WAAELAPRGI TVNIVAPGAT ETPMLNQPGR
QSSPPKLPPI GRFIHPQEVA DLVAYLLSPS ASAITGQQLV ICGGASL
|
|---|
| |