| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dbac_3160 |
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| Symbol | |
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| ID | 8378856 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfomicrobium baculatum DSM 4028 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013173 |
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| Strand | - |
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| Start bp | 3573244 |
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| End bp | 3575349 |
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| Gene Length | 2106 bp |
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| Protein Length | 701 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 645002396 |
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| Product | ribonuclease R |
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| Protein accession | YP_003159651 |
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| Protein GI | 256830923 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCCCGA AAAAACAAGC TAAACAACTC AAATTTTCCA AGAAAAACCT TCTTGCCGCC
CTGCACCAAT CCGGCGCGCC GCTGCGCAGC AAGAACATCT TCGATCTGTT CGACGCCGAC
GCCTCCCTCA AGAAAGTCAT CAAATCCACG TTGGCCCAGA TGGTCGAGAG CGGCGAGATC
GTACAGATGG GCAAGAGCTA CGGCCTCATT GACAACCTGC CGCGCATGAC CGGCACCCTT
GACGTGCGCC GCTCCGGAGT GGGGTACCTC ATTGCCGATG ACAGGAAGCA AAAAGACCTC
TTCATCCACC CCAATAATTT CGGCGGAGCC TGGCCCGGAG ACAAGGTCGT TGCCGTGGTC
GACAGCTCGC GCAAAAAAGA CTCCCCGGAA GGACGCGTCG TCGAAGTTTT GGACCGGGCC
ACGCGAGAAC TCTTGGTCCG GGTCAGCCGG CGCATCCATC AGGACAGCTA TTTCTGCCAC
CCCACGGACT CGCGCATGCC CTTCTACACG GTGGTCGATA CCAGCGACGT CCCCAACCCT
GAAAAGGGCG ACATCTTAAG CGTAGCCCCG GTCGAGGAGC AGGAAAAGGG CATTTGGCGT
TGCACGGCCC TGCGCCGCCT GGGCGAGGAG CGGGACCTGG CCACCCAGGA ACTGCTGGTC
AAGACCGGCT ATTCCATCCC GGAAGTGTTT CCGGTTCCCG CGCTGCGTCA GGCCGAAGCC
CTGCCAGACA CGCCGTCGCC CCAGGACTGG GCGGAACGCA ACGATCTGCG CAAGCTCGCC
CTGGTGACCA TCGACGGCGA GACGGCCAAG GATTTCGACG ACGCGGTCTA CGTGGAACGG
CAGGAGAATG GCTACCGGCT GGTGGTGGCC ATCGCCGATG TGGCCCACTA CGTGCCCGAA
GGCTCGCCCC TGGATGTCGA GGCCTTGGCC CGCGGCAATT CCTATTATTT CCCGCTCTCC
GTGGAGCCCA TGTTCCCCGA GGCCCTGTCC AACGGACTGT GCAGCCTGCG CCCAAAAGTT
GCGCGACTGG CCATGGTCGT GGACACGCCC TATTCCATGG ACGGCGAACC CGGCGCGCCG
AGGCTCTACA ATGCCGTGAT CATGAGCCAG GCCCGCCTGA CCTACAACCA GGTGCAGGCC
GCCCTGGATG GTACGCCGGA CCAGGACACG GCCGAGCTGC TGCCCATGCT GCGCGACGCC
GAGGAACTGG CCAAAATCTT CATGAAGCGG CGCATGGATC GCGGCTGTCT GGACTTCGAC
ATCCCCGAAG CCCAGGTCCG CGTAATCGAG GACATCATCA GCGTCCACGC CGGAACGCGC
CTCTTCAGCC ACCGCCTGAT CGAGGAATTC ATGATCGCGG CCAACGAGCG CGTGGCCGAA
TACATGGGCG CGCGGCAGCG CGTCTTCCCG TACCGCATCC ACCCCCAGCC CGACGAGAAA
AAGCTGGAGA CCCTGCTGCG CATGCTCTCG CACACCAGCC TGGTGGACCG CCTGCCCAAG
GAAATGAACC AGATGGGACT CCAGCACATT TCCCATGCGG CCAAAGGCAC GGACATCGAG
TATCTGGTCA ACCGCCTCAT CCTGCGCACC ATGATGCAGG CCCAGTATTC GCCGGAGAAC
GACGGCCATT ACGGACTGGC GTCGGTCGCA TATTGCCACT TCACCTCGCC CATCCGCCGC
TACGCGGACT TGCTGGTGCA TCGCAGCCTG AAAAGACTGA TCGCGGGTGA GCCGGAAAAA
ATGAGCATGG GCGACGTGCA GGGCATCTGC GAAGGGCTGA ACGCCCTGGA ACGCAAAGCC
ATGGAGGCGG AGCGGGAGAT TCAGAAGAGA TCGGCCATTC TGGCCCTGGA GGACCGGATC
GGGGAAGAAA TGCGCGGGGT TGTTTCAGGC GTTGCCGATT TCGGCTTCTG GGTAGAGCTA
CTGGACATGC CCGTGGATGG ACTGGTGCGG CTTGCGACCC TGGACGACTT CTACGTCTTC
GACCCGGAGC GCCAGGATCT CTTAGGCCAA CGCACAGGCA AGACCTTCGC CATGGGCCAG
ACCCTGAACG TGGTGCTGGA AGCCGTGAGC TTGGAGCGGG TGGAGATCAA CTTCACGCTG
CCCTGA
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| Protein sequence | MPPKKQAKQL KFSKKNLLAA LHQSGAPLRS KNIFDLFDAD ASLKKVIKST LAQMVESGEI
VQMGKSYGLI DNLPRMTGTL DVRRSGVGYL IADDRKQKDL FIHPNNFGGA WPGDKVVAVV
DSSRKKDSPE GRVVEVLDRA TRELLVRVSR RIHQDSYFCH PTDSRMPFYT VVDTSDVPNP
EKGDILSVAP VEEQEKGIWR CTALRRLGEE RDLATQELLV KTGYSIPEVF PVPALRQAEA
LPDTPSPQDW AERNDLRKLA LVTIDGETAK DFDDAVYVER QENGYRLVVA IADVAHYVPE
GSPLDVEALA RGNSYYFPLS VEPMFPEALS NGLCSLRPKV ARLAMVVDTP YSMDGEPGAP
RLYNAVIMSQ ARLTYNQVQA ALDGTPDQDT AELLPMLRDA EELAKIFMKR RMDRGCLDFD
IPEAQVRVIE DIISVHAGTR LFSHRLIEEF MIAANERVAE YMGARQRVFP YRIHPQPDEK
KLETLLRMLS HTSLVDRLPK EMNQMGLQHI SHAAKGTDIE YLVNRLILRT MMQAQYSPEN
DGHYGLASVA YCHFTSPIRR YADLLVHRSL KRLIAGEPEK MSMGDVQGIC EGLNALERKA
MEAEREIQKR SAILALEDRI GEEMRGVVSG VADFGFWVEL LDMPVDGLVR LATLDDFYVF
DPERQDLLGQ RTGKTFAMGQ TLNVVLEAVS LERVEINFTL P
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