Gene Dbac_2078 details

Gene Information

• Locus tag: Dbac_2078
• ID: 8377753
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfomicrobium baculatum DSM 4028
• Kingdom: Bacteria
• Replicon accession: NC_013173
• Strand: -
• Start bp: 2383449
• End bp: 2385296
• Gene Length: 1848 bp
• Protein Length: 615 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 645001302
• Product: DNA ligase (NAD(+))
• Protein accession: YP_003158579
• Protein GI: 256829851
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II)
• TIGRFAM ID: [TIGR00575] DNA ligase, NAD-dependent

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCCTGC CGCTGGACCT TCCTTCCGAG GCCCACCGGC TGGTCGAGCG CCTGGCCGAA 
TACAACGATG CCTACCGCCG GGGCGCGCCC CTGGTCGGCG ACGCCCAGTA CGACCTGCTG 
CTCGCGCGGC TGCGCGAGCT CGACCCGGAT CACCCGTTTC TGCACCGGGT CGAGCCCGAG 
ACCTTTTCCG GCAAGCGCGA AATCCGCCAT CCCGTGCCCA TGCTCTCCAC CGACAAGGCC 
TATACGTCCG AAGAACTGGA GCGCTTTGTG GCCCGCGTGG AAAAAGAGGC CGGGGAGATC 
GGCGTCAGCG AGGTGCGCTA CCGGGTCACG CCCAAGCTCG ACGGACTGGC CGGGCGCGAC 
GACGGGACTT TTTTTGTCAC GCGCGGCAAC GGCGAGAGCG GCTACGAGGT CAGCTCGGCC 
TTTGCCAAGG GCATGATCCC GCTCGGCGGC CGGGGCCGGG GCGTGGGCGA GATGGTCATC 
CTGCAGAGCT ATTTTCAGGA GCACCTCTCC GACGCCTTCG AGCATCCGCG CAATCTGGTG 
GTGGGCATCG TGTCCTCGGA CACGGTCAAC GAACTGGCCA AAAAAGCCCT GGCCGACGAA 
GCCGTGCGTT TTGTGCCCTA CGCCGAGCTG CCGAGTTGGG AAGGGAGCGG GGCGGAGCTG 
CTGCAGCGCA TGGATGCGCT GACGGAGGAG CTTTCGGCGC AAGTGGACTA TCCCCTGGAC 
GGGATGGTGG TGGAGGTGGT GGACGAGGAC GTGCGCCGGA CCATGGGCGC CACCAGCCAT 
CACTACCGCT GGCAGATCGC GGTCAAGCGC AAGGGCGAGA CGGCCCTGAC CGTGGTGACA 
GGCGTGGTCT GGCAGGTCGG CCGCACCGGC AAGGTCACCC CGGTGCTCAT GGTCGAACCC 
GTGAACGTGT CGGGAGCGAC CATTCGCCGG GTTACGGCGC ACAATGCCGG TCTGCTGGAG 
AAGAAGGGGC TGGGTCCGGG CGCGGAGATC GAGATCATCC GCAGCGGCGA GGTCATTCCC 
AAGGTCGAGG CGGTGCTGGT CCCGGCCGCG ACCACGCTGC CCACGGCCTG TCCGTCCTGC 
GGGGCGGCTC TTGAACGCGA GAACGATTTT CTGCTCTGCC GCAACGAACA CTGCCCGGAT 
CAGGTCGTGC AGACCATCGA GCACTGGTTC AAGACCCTCG GCAACGCCGA TTGGTTCGGA 
CGCAAAACCG TGGAAAAGAT GGTCCGTTCA GGTTATGACA GCCTTGAAAA GGTGTACGAG 
CTGGGCGAGG ATGATTTTCG GGCCATGGGT TTCGGCCCCG TGCTGTCCGG CAATCTGGCC 
GAGGCCGTGT ACCTGAGCCG CACCCGCGAG GTCGAGGACT GGCGTTTTCT GGCCGCCCTT 
GGCATTGAGG ATCTGGGCAA GGGCGACAGC CGCAAGCTCC TGGAGCAGTT TCGTCTCCAG 
GATCTCTTGA CCGTCAGCCG GGAGCGGATC GAGGCCGTTC ATGGCTTCGG CGCCATCACT 
GCGGCCTCCA TCGCCAGGGG GCTTGAGCGA GTGGGTCCGA CCCTGCGCCA CCTGCTGGAC 
CTGGGTTTTC GCATCATGCC CACCGGCGCG GCCCGCGAAA AGGTCACGGA CAGTCCCCTG 
GCCGGAAAGC ACGTGGTCTT CACCGGCAAG ATGCGCGGCT CGCGCGAGGA CATGCAGGAA 
GAGGCCCGCG CCCAGGGAGC ATTGGTGCAG AGCGCGGTCA ATTCCAAAAC CGATTTTCTG 
ATCTGCGGCG AAAACGTTGG CGCGAGCAAG CTCGCCAAGG CCCGGCAATT CGGGACGGCC 
ATCCTGCAGG AAGATGAATA TCTGCGCCTC ATCGGCGCGG TAGGGTAA 

 

Protein sequence

MTLPLDLPSE AHRLVERLAE YNDAYRRGAP LVGDAQYDLL LARLRELDPD HPFLHRVEPE 
TFSGKREIRH PVPMLSTDKA YTSEELERFV ARVEKEAGEI GVSEVRYRVT PKLDGLAGRD 
DGTFFVTRGN GESGYEVSSA FAKGMIPLGG RGRGVGEMVI LQSYFQEHLS DAFEHPRNLV 
VGIVSSDTVN ELAKKALADE AVRFVPYAEL PSWEGSGAEL LQRMDALTEE LSAQVDYPLD 
GMVVEVVDED VRRTMGATSH HYRWQIAVKR KGETALTVVT GVVWQVGRTG KVTPVLMVEP 
VNVSGATIRR VTAHNAGLLE KKGLGPGAEI EIIRSGEVIP KVEAVLVPAA TTLPTACPSC 
GAALERENDF LLCRNEHCPD QVVQTIEHWF KTLGNADWFG RKTVEKMVRS GYDSLEKVYE 
LGEDDFRAMG FGPVLSGNLA EAVYLSRTRE VEDWRFLAAL GIEDLGKGDS RKLLEQFRLQ 
DLLTVSRERI EAVHGFGAIT AASIARGLER VGPTLRHLLD LGFRIMPTGA AREKVTDSPL 
AGKHVVFTGK MRGSREDMQE EARAQGALVQ SAVNSKTDFL ICGENVGASK LAKARQFGTA 
ILQEDEYLRL IGAVG