| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dbac_2019 |
|---|
| Symbol | |
|---|
| ID | 8377694 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfomicrobium baculatum DSM 4028 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013173 |
|---|
| Strand | - |
|---|
| Start bp | 2322008 |
|---|
| End bp | 2323912 |
|---|
| Gene Length | 1905 bp |
|---|
| Protein Length | 634 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 645001244 |
|---|
| Product | selenocysteine-specific translation elongation factor |
|---|
| Protein accession | YP_003158521 |
|---|
| Protein GI | 256829793 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG3276] Selenocysteine-specific translation elongation factor |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00475] selenocysteine-specific elongation factor SelB
[TIGR00485] translation elongation factor TU |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0284313 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGTCA TCATGGGTAC GGCCGGACAT ATCGATCACG GCAAGACGAG CCTCATTAAG
GCCTTGACCG GCATCAACTG CGACCGGTTG GCCGAGGAGC AGAAGCGCGG CATCACCATC
GAGCTGGGTT TCGCCTACCT GGACCTGACC CCGCAGATTC GCCTCGGCAT CATCGACGTG
CCCGGGCACG AGCGCTTCGT GAAGAACATG GTCTCCGGAG CGGCTGGCAT TGACTTCGTG
CTGCTGGTGG TTGCCGCCGA CGAGGGCATC ATGCCTCAGA CCCGCGAGCA TCTGGAGATC
TGTTCGCTCT TGGGTATCAG GGCCGGGCTG GTGACTCTGA CCAAGACCGA CATGGTCGAG
GAGGAGTGGC TTGAGTTGGT GCATGAGGAA GTGCAGGCTT ATCTGGCCGG ATCGTTTCTG
GAGGGCGCGC CCATTGTCCC GGTTTCGGCC CACACGGGCG CGGGACTGGA AGAGCTGAAA
GGCCACATCG CCGAACTGTC CTCGACTTTT GCCCCTGACC GGCGTTCGGA CCTGTTTCGT
CTGCCCGTTG ACCGCGTCTT CACCATGAAA GGGCATGGCA CGGTCGTCAC GGGCACGTCC
ATTTCCGGAG CCCTGCGCCT GGGTGAGGAG ATCGAGATTG TCCCGTCCGG ACACCGCTCT
AAGGTACGCG GCCTGCAAGT GCATGGCACG GCCGCCGAAA CGGCCCACGC CGGCGAGCGT
ACCGCCGTCA ACCTGTATGG CCTGGAGGTG GCGGAGCTTG AGCGCGGCGA GGTGCTGGCC
CATCCCCAGA CCCTTTTTCC CTCCCCGGTC TGGGACGTGG AAATGATGTG TCTGTCATCC
TCGCCCAACC CCCTGAAACA CCGCACGGAA GTTCATTTTC ACCACGGCTC GCGCGAGATT
TTGGCCAAGC TCTTTTTTCT CGACCGCGAC AAGCTCGAAC CGGGCGAGAC AGCGGTCTGC
CAGGTCCGCT TTCCGCGACC CCTGCCGGGC GTATTCGGGG ACCGCTGCAT CGTGCGCTCC
TTTTCGCCCC TGCAGACCGT GGCCGGCGGC CGGATCATCA ACCCGCTGGG CCGCAAGGTT
CGCCGCCACT CCAAGGACAT GGAGACCTTA AGCACCCTGG GGTCCATATC CGGCGAGGAG
CTTCTGCTGG CACAGCTGCG CCTGGCCGGG CGCGGCGGCC TGACCGTGGC CGAACTGCGC
ATCATGACGG ACATGGAGTC CAAGCTTCTC GACAAGACCC TGCAGATCCT GGGCGGGAAG
CAATTGGCCT TCCAGTTCGA CCGCGAGGAC AGGCGCTTTG TCGGCGCGGA CGTGCTCGAC
GGCCTGGCCG GAGACTGTTT GGCCTACCTT GGCGACTATC ATCGCCGCGA ACCCATGCGT
CAGGGATTGT CGCGGGCTGA GCTGATTTCG GGATTCGGAC GGGGCATGCA CCCCAAGCTG
GTGCACTTCC TGGTTGAGCG GCTGGTCAAA TCCGGCCAGG TGGTGCTCGA AGCCGACATC
CTGCGACTGC CGGGACATGT GGTTTCCCTG GCCTCGGATC AGTCGGGATT GCGTACGCTG
ATGGAGACGG CCTATGTGCA AGCGAGATTC ATGCCGCCCA CCACCAAGGC GTTTCTGGAG
GAAAACGGGC TGACAGCCAA GGATGTGGCG CAGATGTACC GGCTGCTGAT GGAAGAGGGC
GTGCTCATCA AGATCAGCGA GGAGTTTTAT TACGCCAAAA CGGCCATGGA CGAGATTGTC
GCCCGCGTGC GGGGCTTCTT CGGGTCCAAT CAGGAGATGG GCCCCCAGGA CTTTCGCGAT
CTGACGGACC TGACGCGCAA GTTTGCCATC CCGGTGCTCG AATATCTGGA CAAGGAAAAG
ATCACTATGC GTATTGGAGA TAAGAGGCAG ATTCGGAAGC GTTAA
|
|---|
| Protein sequence | MPVIMGTAGH IDHGKTSLIK ALTGINCDRL AEEQKRGITI ELGFAYLDLT PQIRLGIIDV
PGHERFVKNM VSGAAGIDFV LLVVAADEGI MPQTREHLEI CSLLGIRAGL VTLTKTDMVE
EEWLELVHEE VQAYLAGSFL EGAPIVPVSA HTGAGLEELK GHIAELSSTF APDRRSDLFR
LPVDRVFTMK GHGTVVTGTS ISGALRLGEE IEIVPSGHRS KVRGLQVHGT AAETAHAGER
TAVNLYGLEV AELERGEVLA HPQTLFPSPV WDVEMMCLSS SPNPLKHRTE VHFHHGSREI
LAKLFFLDRD KLEPGETAVC QVRFPRPLPG VFGDRCIVRS FSPLQTVAGG RIINPLGRKV
RRHSKDMETL STLGSISGEE LLLAQLRLAG RGGLTVAELR IMTDMESKLL DKTLQILGGK
QLAFQFDRED RRFVGADVLD GLAGDCLAYL GDYHRREPMR QGLSRAELIS GFGRGMHPKL
VHFLVERLVK SGQVVLEADI LRLPGHVVSL ASDQSGLRTL METAYVQARF MPPTTKAFLE
ENGLTAKDVA QMYRLLMEEG VLIKISEEFY YAKTAMDEIV ARVRGFFGSN QEMGPQDFRD
LTDLTRKFAI PVLEYLDKEK ITMRIGDKRQ IRKR
|
|---|
| |