| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dbac_1980 |
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| Symbol | |
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| ID | 8377654 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfomicrobium baculatum DSM 4028 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013173 |
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| Strand | - |
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| Start bp | 2272882 |
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| End bp | 2274963 |
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| Gene Length | 2082 bp |
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| Protein Length | 693 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 645001206 |
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| Product | type IV pilus secretin PilQ |
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| Protein accession | YP_003158484 |
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| Protein GI | 256829756 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0209745 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGATCT TCAGAGCGAT ATCTGGATTT TTATTTTTAG GTTGTATCGT TGTGCTGACT
TCTTGCGCAA CGCACTCTAA GCCTGCTAAT ATGGAAACAG GTGATGCAGC TGGCCTTTCT
GTTCAAGATT TGCAAACAGT GGTGGTTTCT GAAGCGTTAG GCAAAACAAT CATCGATATT
CCACTGGATG CCAATGCGCA AATTTATGCT GATCACGATG CTAATGACAA TATAAAAGTT
TCATTCACTC CGCCGGTTAC TGATTTTGAA CTACCGGCAA GTGTTACAGC GCTTGTCTCT
GATATTAAAA AAGATATGGA TGGAGAAAGG GTTGCCTCTT TGAATATTGT TTTGAATGAG
AACAGTAAAT TTCTTTTATC GAAACAATCT GACACCCTTG GACGCCTGAT GTTGGTAGCA
GACGAAGCGA TATCTCCACA GCTTCCATCG AACTACATTA CGTCTCTGAA TTTCAAACCT
AAAAATGATT CTTTGCAGGT CGTCACTTAT TCGAGTTTGC CTTTTGAAGT GACCCCTGGG
CAAGATGGAG ATTTCAAACT TACGTTCCGC AAAGTGCAAT TTCAGGATTC GTTGCTGAAA
AAATATGATG TGACAAAGCT TGGATCATCA ATTGATTACG TCACCGCGCT TAACGGTAAT
GATGGCAACG CCTATCTTTC ATTCGCCGGC GCAAAAAATC CCGCTTTGTC CGTTCTGCGT
AAAGGAGACG AAACACATAT CTTGATCAAG GGGAAAGGCA CTCAGGTGGC TCAAGCCGAT
AGTGCCGTCG CCGAAGCTGC TGGAGCCGGA GACGCGATTG CTGAAAATGC GAGCGAAATT
CAAGAGCTCA ATACCCTTTT TCCAGGCATG AAAGAGCGTT ATACTGGTGA GAGGATATCT
ATTGATTTAC AGGACGCTGA TGTTGAACAT GTATTGCGTC TTATTTCTGA AATCAGCGGC
TACAATTTGA TTCTTGATGA TGATATTTCA GGGAAAATCT CTCTTAAGCT TGTCGATATT
CCTTGGGATC AGGCTCTTGA TCTGGTACTT TTGCAAAGAG GTCTGGGCAT GGTCATAAAG
GGCAACATCA TGCGCATCGC TTCGACCACC AAACTTGAAG CAGAACGCGT TCAGCTGCAG
AAAGCCCGCG AGGCCGCCAT TCAGGCGCAG GTCAGCATGC AGAATCTTGC TCCGCTGAAG
ACTGAATACA TGCAAATCAA TTATAACACC GCCGCCGAGT TTGAAGGCAA GGTCAAGACG
ATGTTGACCG GTCGCGGTTC CGTTTCTTCG GATCCGCGTA CGAACATTCT GATTGTAACC
GACACTGAAG ACACCTTGAA GCGGGTGGAC AGTTTCATCA AGAAACTGGA TCGCGCTGAA
CGACAGGTTA TGATCGAGGC CCGGCTTGTC TACGCTACGG ATGAATTTCA GAGAAGTCTT
GGGGTCAAAT GGGGTACGTC TTATGCTACG GAAACGGCAG CAAACCTTCC GAGTGAGCAA
TGGCGCGGCA CTTTTGCTTC CACGGGCCTT AATGCAATCA ATACTGTCAA TGGAATCACC
CTTGGCGGGA CAATAGGTAA ATTTTTGGGC GAAGACTTGT TTGCGCTGGA TGCCGCACTG
CAACTCGGTG AAGCCAACAA TCTGGTTAAA ACGATTTCCT CTCCTCGAAT TCTGACGCTC
AACAACAACA GAGCTGAGAT ACAACAGGGC ACCAAGCTTG CCACCGCGAC TGAATCCGAG
AGTGGTGGCA CCACGACCGA GTACGAGGAA GCTGTTTTAA AAATTTCAGT CCTTCCTCAG
ATAACTCCGG ATAACAAGCT TATTCTGGAT CTGGAGATAA GTGACGATAG CCCCAAGAGT
GACGGGCGTG ATATCGACAC AAAGCAGACC AAAACTAAAA TGATGGTTAG TGATCGCGAG
ACCATTGTTA TCGGCGGTGT GCAAAAAACC ACGGAAACCA GCAATACGAA CCAGATACCC
GGTTTGGGTG ATGTGCCTGG CCTTGGCTGG CTCTTCAAGA ACACCTACGA TGCCAAGTCC
AAAGCTGAAC TGCTCATATT CATTCAGCCT CGTATCATGT AG
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| Protein sequence | MKIFRAISGF LFLGCIVVLT SCATHSKPAN METGDAAGLS VQDLQTVVVS EALGKTIIDI
PLDANAQIYA DHDANDNIKV SFTPPVTDFE LPASVTALVS DIKKDMDGER VASLNIVLNE
NSKFLLSKQS DTLGRLMLVA DEAISPQLPS NYITSLNFKP KNDSLQVVTY SSLPFEVTPG
QDGDFKLTFR KVQFQDSLLK KYDVTKLGSS IDYVTALNGN DGNAYLSFAG AKNPALSVLR
KGDETHILIK GKGTQVAQAD SAVAEAAGAG DAIAENASEI QELNTLFPGM KERYTGERIS
IDLQDADVEH VLRLISEISG YNLILDDDIS GKISLKLVDI PWDQALDLVL LQRGLGMVIK
GNIMRIASTT KLEAERVQLQ KAREAAIQAQ VSMQNLAPLK TEYMQINYNT AAEFEGKVKT
MLTGRGSVSS DPRTNILIVT DTEDTLKRVD SFIKKLDRAE RQVMIEARLV YATDEFQRSL
GVKWGTSYAT ETAANLPSEQ WRGTFASTGL NAINTVNGIT LGGTIGKFLG EDLFALDAAL
QLGEANNLVK TISSPRILTL NNNRAEIQQG TKLATATESE SGGTTTEYEE AVLKISVLPQ
ITPDNKLILD LEISDDSPKS DGRDIDTKQT KTKMMVSDRE TIVIGGVQKT TETSNTNQIP
GLGDVPGLGW LFKNTYDAKS KAELLIFIQP RIM
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