Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dbac_0008 |
Symbol | |
ID | 8375639 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfomicrobium baculatum DSM 4028 |
Kingdom | Bacteria |
Replicon accession | NC_013173 |
Strand | + |
Start bp | 17501 |
End bp | 24511 |
Gene Length | 7011 bp |
Protein Length | 2336 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 644999236 |
Product | Hemolysin-type calcium-binding region |
Protein accession | YP_003156554 |
Protein GI | 256827826 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG2931] RTX toxins and related Ca2+-binding proteins |
TIGRFAM ID | [TIGR03660] T1SS-143 repeat domain [TIGR03661] type 1 secretion C-terminal target domain (VC_A0849 subclass) |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGCTGAAA CTCAGAATTC CAAACAGAAC GTACAGGCTC CCCAGGCTGG ACAGACCGTG GTCGTGAACG CGATTCCGGG CCAGGACATT GTGCTCGAGG CTGCTTTTGA TCAGGCCGAA GTGAAGATGG ATGGCGGCAA CGTGGTTTTC GAGTTCGCAA ACGGCGGCCA GGTTGTCCTC GACTTCACGG ATCTGGGCGA AGCCCAGGCC CCCAATGTTG TCATGCCTGA CGGCACGATT CTGAACATGC AGGAATTTCT GGCCTCCCTG GGCGAAAAAG ACATCGAACC CGCAGCCGGG CCCGAGGGCG GCGCTGACGG CAGTGGCGGT GTGGGTGAAT ATCAGGATGA TGCGGGCGAT TTGCTTGGTG GCGTGGACAA GCTGGGTGTG CTCGGACCGC GGGCATTTTC GGCTTTTTCC GTGGAGGCGC TGGAGGCCAA CGGCAGTATT CCGACCTTGC TGGGCGGGGA GAGTGTCCTC GTGGAAGATG AAAAAATGCT ACCTGAAGGT AACGATGAAG ACGACGGTGG CGTCGGCTCC GTGACCGGCA CTATTGTCGA CAACGTGGAT TGGGGTGCCG ATGGCTTTGG CGAGGTGACC GGCTTCAATG TTGGAGGAGC ATCCTTCTCT GCCGGTTCCA CGGTTTTTTG GGGTCAGGAT GGCACATTTC TGGGAACCTC CGGCGAGGGT GCTGCCGCTT CGCTGGTTGT AGGTGCCGAT GGCTTTTACA CGTTCACTTT GCTGGACAAC ATGCTGCTTG GTGAAGGCGT GCAAGGCGAG CAGATTAATG TGCTGGGCAC GGTGCAGATT GTTGGTGCCG ACACGACCGG TGATGAGGTT GAGATTCCGC TGACGCTGAA CGTTCAGGAT GATGTGCCGG AGATCGTCGG TGAGATGAAT TCCGATACTG CGATCGTCGA AGATGAGGCT ACGAGAGGCG GGATTAACGA ATGGTGGGAT GGTTTGAAAG GAAAGTTCGA AGGAACCATC GAAGATAATG TGAAGTGGGG TGCCGATGAA TTTCGGGGAG TTACCGAATT CAGCATAGGT GAGCAGGTTT TCACGGTCGA GGCTGGTGAA AGCACTACCG TTTATTGGGA CCAGCACGGC AAACTTCTTT CTCTTGGCGA CGAGCCTTCC AATGGCCCGG AAATGAGTTT TGCGAGTTTC GGCAAGGGAT ACGATGGAGA ATTTCGACCT GCCGCATCCC TGGAAGTCAA GAGCGACGGA ACGTACATCT TCAGATTGCA TGATAACATG CTCCTCGGTG TAGGAGAAAA GGGTGAGCAG ATAGACGATC TGGCGACCGT CATGATCACG GGTTTGGACA ACGATGGCGA CGCGGTTCAG GTGGGTGTGA ATCTGCAGGT CCAGGACGAT GTGCCGCTTT GTTTGACTTG GCCTGACTAC GCTATTGTCG AAGACGAGAA GATGGAGGGC GGCAACAATG AGCCGGGGAG CTGGTTTTTT CCGGACTTGC CGTCCCAGGT CGATGGCACG ATTGAAGATA ACGCAGCATG GGGAGCCGAT GGATTCGGAC GGGCTACAAC TTTTGAAATT GATGGGTACT CGTTTGCAGT CGGAACTACC GTGTTTTGGA ATCAACATGG CAATCTTATT TTGCCCGAGG GTATGGAAGG CGAAGATCAA GTTCAATTTA GGGGAGCTGT TTCGATATCC GAAGTTTCTG AAGAGCCAGA AGGAGCGGCA GCGTCCTTGA TCGTGAATGG CAACGGTTCC TATACGTTCA CGTTGATAGA TAACATGCTT ATGGACGGTA AGGGCGAACA ATACGACTTG CTCGATCGGG TCAAGGTTAA TGCTGAGGAT GGAGATGGTG ACAAGGTCAG CGTCTATGTG AATCTGATCG TCAAGGATGA CAAGCCTGTT TTGGATGAAG ATGGTGTGTT GCGCCTCACG TTGGAAGAGG AATCGGTACC GGGAGATGAC GGCGTAATAG GGAACAATGA GCCAGGTGAC GGTTTGAGTT ATACTTCCGG TGAACAGTCC ATGCGTGGCG CTGTAAAGTG GGGTGCCGAC GATTTTGGGA AAGTTGTTCA GCTGCAATTC GGTTCTGGAC GTGGGGTTGT TAGGATTGAT GTCGATCAGG AAGATGGCGG CATTGTATAT TTTGATGCAG ATGGTAATCC TCAGTCAACT TCAGTTGGCT CGGCTGCGAT TCTTGAGGTT CAAGCGGATG GCCAATACAC GCTTACGGTA ACAGGCGCTA TGAATCACCT CTTGCAAGGA GAAGATCGCC TTCCCCTTGG TGCTGTTAAA ATAATAGCTC AGGATGGCGA TGGTGATAAA ATTTCTGTGC GTTTAGAAGC AGAAGTTCAG GATGATGTGC CTGTAATCAC CGTAACGGAC CCAACTCCTG TTCCCGGTAT AACCGTACAG TTGGTTGGCA GTGATGCCGG CTATAACAAC ACCTGGGGCT ACTACATCAA GGCTGAGAAT GGCGAGCCGG ATACTGGCGT GGTTGTGTGG GATTCTGTAA AAAATCAGCC CGTAACAAGC GTGACGTTGC CTGAAGGGGT GCTGCCCGGC CAAGTTGGTT TTTTTCTCAT CCCGAACGGC GATTCATTGA ACCAAAACCT GACTTCCGGC ACGGAGGTGA CTTTTAGCTT GGTTAATGGG CAGTGGGTGG TGTCCGCACA AGGAGTGCCC TTGAATGGTG TAGGCGCTCC AGCTTTGTTT GATAACAGCG CGCTGAACGC TGATGGAAAG TCATATATAA ATACCGTGGC AACCGGATCA GTCACCGGGA ATCAGAATTG GGAAGATGTT TATGGCGGCG GCGATGGCGA TTTTAATGAT GTTATGCTTA ATGTCACCAT GCCCTTGCTT GTGGATGACA GCTTTTTGAA TGTTGATGCA ACCTCCGATG TAGGGCGGGC TCGCTTCAGT GTGGATTACG GAGCAGATGG CGCCGCTGAA CTCGAGAGCA AGGTTTATAA TTTGACCCTC GAGAAAAATG AATCGGGTCT GGAAGACACG GCGCTGAAGT CCAATGGTGA AAATGCAGCC GTGTTGTTGA AGACGGATGG AAGTACCAAG GTAATTGGTT ATGTTTTGGT AAATGGGGTG GAAACCCCTG TGTTTACTCT GTCGGTTAAC GCTGCAACGG GAGAAGTGAC CCTGGACCAG CACCGCGCGG TTGTTCATCC GACAGCAGGT GACTCCAATG AAATAATCCG GGTTTTGGAC GGAGCAATTT TGCTTGAACT CACCGCCAAG GATGGCGACG GTGACTTGGT AAGCGCGAGC CTCGACATAG GACGCATGCT CTATATCGCC GATGATGGTC CTGTGGCCAA TGATGATGCC GATACAGCCG TGTGGCAGGT CGACAGGCTT GAGGCTTCCG GTAACGTTCT TACAGGAGTT GGCACGGCCA GCGAAGACGC CGGAAAGGAT CTCCATGAAG GCATGACTGA TGGTGCCGCC GCGGCAGTTG TCGGCGTGCG GTCCGGCGCA GAGGGTGAAA CCTGGGTGGA AGGAGAAGAC ATCGCCAGCG GCGGAAGCGC GACAGTTTCC GGAAGTTATG GAACGCTGAC CATGGAATCT GACGGTGACT ATACGTACGC AGGTAAAGTC ACAAATCTCG TGCTTAACGC CGATGACAAC ACGGAAGCGT TTAATTTTGG CACAAGTTAC AGTGAAAATT TGGGTGAAGA GCTTCATCTT GACAACGCAG ACGGAACAAT AGTCAGCGTT GCAAATGGGT TAGGGGTAGC CGGGAAGACG CCTGACACCT CCAATTCCGT GTCCGACCAG CTTGGATTCT CGCCCAAGGA GGGCTCGGAA GCTCTCTCCG TCAATCTCGA GACCATGGCT GTTCGAGCAG TCGTCGATAT CTCCAATTTG TACCAGAATG AATCAGGGCA GAGCGGAAAT AATGGTGAAA CAGGCCGGTG GGAAGCTTTT GATGCTGAAG GATTCAAAGT TGGTGAGGGT TACATTGGAG GGGAACTCTT TGACAATGTC AACGTGCATC AAGGGCAGGT TGAAGTCGAA GTCATGGGCG CAGATGGTAA ACCTATAGCG TTTCAGTATA TCGTGTTCAG CGCTGTTGAT TACCTCGGTG GTGACAAGGC TAACGACAGT TCTGACTACT ACGTGAAGGC TGTCAGTTTT GAAGAATACG TAAAGCCTGG ATCCGAAGAT GAATTTAGCT ATCAGATGAA AGATGGCGAC GGCGATACCG ATAGCGCAAC CTTGACCATT ACAACCGGTC ATGACTTGAG TTCCGGTGAC ATCGGAGTTG TGCATGAAGA TGCGCTTTCC TCTGGAAATC TGGATAATTC TTCTCAAGGT CTGACCACCT CGGGCTCTTT GAACATGGGC GCGGGTGAGT ACTCCCTCGT CGCGCCGGTG CAGAAGATCA CCTCCGATGG CCACAATGTT GAGTTTGTGG TGGACAACAC CGGGGAAGAG TCGATCATGT TTGGCAGGGT TGCCGATGGT GACTCTTTCA GAAACATCTT ACAGGTCACG ATGGACAAGG GCGACGGTTC TTACACGGTG ACTTTGCTTG GGCAAGTTGA TCATCAGTAT GCGGTTGAGA CCAGTGGGAA CCCTGATGGA AGTGGCGCTG GTGAGACGGA AATGTTGTAC CTGCAGTTTG TTGCTGCAAA AACAGCAGAA GGAACCACAG AATATCAAGG TTTTAATATT AAGATCGAGG ACGATGCGCC TGTTATTCTT GCATCGCCGA ATTTGGTAAC CAACGGCAGC TTCGAGAACC CCGACGTGAC GGGTTGGGGA ACTTATGGAA ATATCCCAGG CTGGAAGGCT GAAGCTGGTC AGATCGAGAT TCAGGATTCT GGCGCCGGCG GTGTTGCGGC ACAGCATGGT GGTCAGCTGC TTGAGTTGGA TGCACATGGC GGAACTGCCA CTAATGCTAC TGTAACCCAG AGCATACCGA CTGCGAATTA TGGCAATTTA GTACTAAGTT TCTGGTTTGC ATCTCGCGCT TATGGTGACA TTGCCGAAAC CAACACGGTT AAAGTGTATT GGGGTGATGT CGAGATCGGT GAAATAACCG ATTCTGTTGC AGGTCGCTGG ACGCAGCATA GTTTCAATGT TGCAGGAAAC CCGGATGGTT CAGATGTCGA GCTGCGATTT GTTGGTGCTG GTACAGATGA CAGTTATGGT GGCCTTATCG ACAATGTGAG CGTGTACAGC ATGCCCAGTG TCGATGAAGA AGGGCTGCAC GTCGCGACTC CTGTTTTCAC GACGGCCTCG TTGCCCGTGC TCTTTGGTGC TGACGGCCCA GGGGATATAG TGGTTGATTT GGATGTTGTC GGTTTGAAGT CGAACGGCGA TCAGGTCAGC ACGGCCTGGG ATCCTTCTAG TCATATTTTG ACGGGAACCG CTGGCGGCAG AACGGTTTTC ACCTTGGAGG TTGATCTTGA TACTGGAAAG TATACATTTT CTTTGAATGA TCAGCTCGAT CATGCCGCAA CTTCTGATTT TATGGCGCTT GACTTCACGT TCACTGCTAC TGACGGAGAT GGGGACTTTG TTGACGGAAC GTTTGCGGTG GGTGTGTTCG ATGATGAACC GACCGCACAC GCTGATTTTG ATGGCGTCAC TTCTGTGCCG AATAGTACCG CAGCACCTTT GGCAGTCGGG AATGTGCTGG ATAATGATTC GATTGGCGCC GATGAAGACG CGACGGTGAC CCATGTTTCG TTCGCGGGCA ACACGTTTGC GGTTGATTCA GATGGCGTGT CAGTTAAGGG GAATTACGGC ACGCTTTTCA TGGAGCAAGA TGGTAGCTAT GAATATGTTT TGAATGGAGA AACTGTTATC ACTAACGGTC TGAATGAGAA CTTGGTGAGC ATTTATGGGG CTACGACATT ACAGATATTT GAGAGTAATA ATGGCGTTTT GTCTTTAGAT GTTTCTGAAA TACAGCCTGG TGGTTATGCT TGGACTGGCG GAGAAAAGAA AGCGGGTTGG GGAGTGACGC AGAAGATGCC TGCCACAATA GATTCAGGGG AGTCGCTTGT TTTCAAATTT GTAGAACCTG TAACGACTCA GACCTTTACG TTTTCTTTAG GTCAGAACAA TGCTGGGCAG GCCACGATCC CAAATTGGTA CGCATTTTCA TCCACAGGTT CTCTGCTCGG ATCCGGGAAT TTTGCGGACC CGAACAACTC CGGAGAATTG ATTCCTGATT TGAAGGTCTC AATTTCTGGT GAAGTTTCTT ATATAGTTTT TTCACACCAA TCAGCCACCA ATTCTCAAGG CTTTGTTATT TCGGGCATCT CATATGGAGA AGGCGATACG GGAATTGACC AGTTCGAATA CACCATGCAG GATTTTGATG GAGACGTGTC CAGCGCAAGT CTTTACATAA CCTCTGATGA GTACCGGGAA GGAGATGCAG GCAGTAATTC GTTGTATGGA CACGAAGGAG ACGATATTCT GCTCGGCCTT GGCGGAACGG ATACGTTGAT GGGTAACGAT GGCAATGATG TCCTGCACGG TGGGGATGGC GATGATTTCC TCAACGGCAA CAAAGGCGAG GATCAGCTTT ACGGAGACGC CGGAAACGAT ACGATCCATG GGGGCATGGA TGATGACGTC ATTTATGGTG GGTCCGGTGA CGATCTGATA TATGGCGACA AGGGTGATGA TACAATGTCC GGCGGAGAAG GTCGTGATGT CTTTAAATAT GCTGGTGACG CTTTGGAAAA TACCACCAAT GGCGACGTGA TTTTGGATTT CGATTACGAT AAGGATCAGC TGGATTTGAG TGATTTACTC AATGGAAAAG ATGCAGATGG TCTTGGTGAC TATTTGAAGA TTGAAAGTTT TGAATCAATT GATTCGACTA CTGCTAAGGT CGTTATTCAG GTTGATGCTG ATGGCAGTGA TAATGATTCG GATTTTTCAA CCACATTGGC CACTATTACC ATGAATAACT TGGATCCAAG CATCGATGAT ACCAATATCC TGAATGCGAT GCTGGCTGAC GGCGCCCTTA AGATAGTTTA A
|
Protein sequence | MAETQNSKQN VQAPQAGQTV VVNAIPGQDI VLEAAFDQAE VKMDGGNVVF EFANGGQVVL DFTDLGEAQA PNVVMPDGTI LNMQEFLASL GEKDIEPAAG PEGGADGSGG VGEYQDDAGD LLGGVDKLGV LGPRAFSAFS VEALEANGSI PTLLGGESVL VEDEKMLPEG NDEDDGGVGS VTGTIVDNVD WGADGFGEVT GFNVGGASFS AGSTVFWGQD GTFLGTSGEG AAASLVVGAD GFYTFTLLDN MLLGEGVQGE QINVLGTVQI VGADTTGDEV EIPLTLNVQD DVPEIVGEMN SDTAIVEDEA TRGGINEWWD GLKGKFEGTI EDNVKWGADE FRGVTEFSIG EQVFTVEAGE STTVYWDQHG KLLSLGDEPS NGPEMSFASF GKGYDGEFRP AASLEVKSDG TYIFRLHDNM LLGVGEKGEQ IDDLATVMIT GLDNDGDAVQ VGVNLQVQDD VPLCLTWPDY AIVEDEKMEG GNNEPGSWFF PDLPSQVDGT IEDNAAWGAD GFGRATTFEI DGYSFAVGTT VFWNQHGNLI LPEGMEGEDQ VQFRGAVSIS EVSEEPEGAA ASLIVNGNGS YTFTLIDNML MDGKGEQYDL LDRVKVNAED GDGDKVSVYV NLIVKDDKPV LDEDGVLRLT LEEESVPGDD GVIGNNEPGD GLSYTSGEQS MRGAVKWGAD DFGKVVQLQF GSGRGVVRID VDQEDGGIVY FDADGNPQST SVGSAAILEV QADGQYTLTV TGAMNHLLQG EDRLPLGAVK IIAQDGDGDK ISVRLEAEVQ DDVPVITVTD PTPVPGITVQ LVGSDAGYNN TWGYYIKAEN GEPDTGVVVW DSVKNQPVTS VTLPEGVLPG QVGFFLIPNG DSLNQNLTSG TEVTFSLVNG QWVVSAQGVP LNGVGAPALF DNSALNADGK SYINTVATGS VTGNQNWEDV YGGGDGDFND VMLNVTMPLL VDDSFLNVDA TSDVGRARFS VDYGADGAAE LESKVYNLTL EKNESGLEDT ALKSNGENAA VLLKTDGSTK VIGYVLVNGV ETPVFTLSVN AATGEVTLDQ HRAVVHPTAG DSNEIIRVLD GAILLELTAK DGDGDLVSAS LDIGRMLYIA DDGPVANDDA DTAVWQVDRL EASGNVLTGV GTASEDAGKD LHEGMTDGAA AAVVGVRSGA EGETWVEGED IASGGSATVS GSYGTLTMES DGDYTYAGKV TNLVLNADDN TEAFNFGTSY SENLGEELHL DNADGTIVSV ANGLGVAGKT PDTSNSVSDQ LGFSPKEGSE ALSVNLETMA VRAVVDISNL YQNESGQSGN NGETGRWEAF DAEGFKVGEG YIGGELFDNV NVHQGQVEVE VMGADGKPIA FQYIVFSAVD YLGGDKANDS SDYYVKAVSF EEYVKPGSED EFSYQMKDGD GDTDSATLTI TTGHDLSSGD IGVVHEDALS SGNLDNSSQG LTTSGSLNMG AGEYSLVAPV QKITSDGHNV EFVVDNTGEE SIMFGRVADG DSFRNILQVT MDKGDGSYTV TLLGQVDHQY AVETSGNPDG SGAGETEMLY LQFVAAKTAE GTTEYQGFNI KIEDDAPVIL ASPNLVTNGS FENPDVTGWG TYGNIPGWKA EAGQIEIQDS GAGGVAAQHG GQLLELDAHG GTATNATVTQ SIPTANYGNL VLSFWFASRA YGDIAETNTV KVYWGDVEIG EITDSVAGRW TQHSFNVAGN PDGSDVELRF VGAGTDDSYG GLIDNVSVYS MPSVDEEGLH VATPVFTTAS LPVLFGADGP GDIVVDLDVV GLKSNGDQVS TAWDPSSHIL TGTAGGRTVF TLEVDLDTGK YTFSLNDQLD HAATSDFMAL DFTFTATDGD GDFVDGTFAV GVFDDEPTAH ADFDGVTSVP NSTAAPLAVG NVLDNDSIGA DEDATVTHVS FAGNTFAVDS DGVSVKGNYG TLFMEQDGSY EYVLNGETVI TNGLNENLVS IYGATTLQIF ESNNGVLSLD VSEIQPGGYA WTGGEKKAGW GVTQKMPATI DSGESLVFKF VEPVTTQTFT FSLGQNNAGQ ATIPNWYAFS STGSLLGSGN FADPNNSGEL IPDLKVSISG EVSYIVFSHQ SATNSQGFVI SGISYGEGDT GIDQFEYTMQ DFDGDVSSAS LYITSDEYRE GDAGSNSLYG HEGDDILLGL GGTDTLMGND GNDVLHGGDG DDFLNGNKGE DQLYGDAGND TIHGGMDDDV IYGGSGDDLI YGDKGDDTMS GGEGRDVFKY AGDALENTTN GDVILDFDYD KDQLDLSDLL NGKDADGLGD YLKIESFESI DSTTAKVVIQ VDADGSDNDS DFSTTLATIT MNNLDPSIDD TNILNAMLAD GALKIV
|
| |