| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daud_1821 |
|---|
| Symbol | |
|---|
| ID | 6026645 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Desulforudis audaxviator MP104C |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010424 |
|---|
| Strand | - |
|---|
| Start bp | 1924528 |
|---|
| End bp | 1925886 |
|---|
| Gene Length | 1359 bp |
|---|
| Protein Length | 452 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 641594638 |
|---|
| Product | CRISPR-associated RAMP Cmr1 family protein |
|---|
| Protein accession | YP_001717949 |
|---|
| Protein GI | 169831967 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1367] Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) |
|---|
| TIGRFAM ID | [TIGR01894] CRISPR-associated RAMP protein, Cmr1 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGAAGAC TACCAGGAGA TGGGAACGGT AGGGAACCTG TGCCGCCCCC TGTCCAGCCT
CAGCTTAGCC GACGGGTGAT AGGCAGTCAG ATGGTGCCGC TGGTGACCCA AATCCGCAGC
TACGAATTGA TTACCCCCCT GTTTGGTGGC GGTGTGGAGC CGGGAGAGAC CGATCCGGTA
ACGGTCATCC GGGGCCCGGA AATTCGGGGG CAGCTGCGTT TCTGGTGGCG CGCCTGCCGG
GGCGGGCGCT TCAACGGCGA TCTGGCGGCG ATGAAAGAGG CGGAGGATGA ACTCTGGGGG
GCAGCCAGCA CAGAGAGAAA ACCAATGCCG TCCCAAGTGG AGATTATGAT CTCGATCGAA
CAAAGTGGGG AGAGCAAGCA CCCGTTTGAG GTTGTCGCGG GTTTGGTAGA CGGGCGTAAA
GACCAACCAA AACCGAAAGT TAAAGCGAAT GAAATTGTAG CCCCCGCTTA CGCGGCATTT
CCTTTGCAAC CGTCGGAAAA GGAAATGCGG GCCGGCGGTA TCGGCATGCA AACTAAAACG
GTGCGCACCA AGGTCTGCTT TACGTTGAAG ATCACGTATC CCGAAAAACG GCGAGAGGAG
GTAGAAGCCG CGCTCTGGGC CTGGGAGACT TTTGGCGGCA TTGGTGCCCG CACGCGGCGT
GGTTTTGGGG CGTCGAAGCT GGTTAGTGTT GACGGCAAGC CCGTTACTCC ATCCAGGGCC
AATGAGGTTG AAGCCAAAAT TCGCAAAGGC CTGCAAAAGC ACGTGGTCAG CGGGACCTGG
CCTGCCAGCG TGCCGCATCT TTCCTTGAAT CCGCGTATGA AAGTTACAGG TAGGCGTTCG
GACCCTATCG CCGCCTGGGA GTATCTGGTC AAATGCCTCC GAGACTTTCG CCAGAGCCGC
TACCCAGGGG CCTCTCCAAG GCAGCCGGGG CGCAGCCAAT GGCCCGAGCC GGATGAAATC
AGAAGACTTA CAGACCGTCG ATGCGACAGG CACGCCAGGT CCCTTTCGAC AGTGAGGAAG
TTCCCGCGGG CGGCCTTCGG GTTGCCGATT GTATTTCATT TCAAGGACGA GAAGATCGGT
GACCCATACG ATACTATACT GCAGGGTCGA GATTACGAGC GCCTGGCCAG CCCCCTTATC
TTGCGGCCGT TAGCCTGCGC GGATGGTGCT GTTGGCCTGG CAGTGGTTTT AGAAGGAACG
GGTGTCACGG TGCTCCCAGA CAGCCTGATT CTTAGAAAAA AGGAAGAAGT CGATATAAGC
TGGCCGGTGG AGGCGGCAAT CGAGGCTCAA GAGGCTCAAG AGTTATCGCC GCTCAATGGG
ATCCCAGATG TCTTACAGGC TTTTTTAAAG AAACTCTAA
|
|---|
| Protein sequence | MRRLPGDGNG REPVPPPVQP QLSRRVIGSQ MVPLVTQIRS YELITPLFGG GVEPGETDPV
TVIRGPEIRG QLRFWWRACR GGRFNGDLAA MKEAEDELWG AASTERKPMP SQVEIMISIE
QSGESKHPFE VVAGLVDGRK DQPKPKVKAN EIVAPAYAAF PLQPSEKEMR AGGIGMQTKT
VRTKVCFTLK ITYPEKRREE VEAALWAWET FGGIGARTRR GFGASKLVSV DGKPVTPSRA
NEVEAKIRKG LQKHVVSGTW PASVPHLSLN PRMKVTGRRS DPIAAWEYLV KCLRDFRQSR
YPGASPRQPG RSQWPEPDEI RRLTDRRCDR HARSLSTVRK FPRAAFGLPI VFHFKDEKIG
DPYDTILQGR DYERLASPLI LRPLACADGA VGLAVVLEGT GVTVLPDSLI LRKKEEVDIS
WPVEAAIEAQ EAQELSPLNG IPDVLQAFLK KL
|
|---|
| |