| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daud_0282 |
|---|
| Symbol | |
|---|
| ID | 6025687 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Desulforudis audaxviator MP104C |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010424 |
|---|
| Strand | - |
|---|
| Start bp | 304147 |
|---|
| End bp | 305094 |
|---|
| Gene Length | 948 bp |
|---|
| Protein Length | 315 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 641593136 |
|---|
| Product | 2-nitropropane dioxygenase, NPD |
|---|
| Protein accession | YP_001716475 |
|---|
| Protein GI | 169830493 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2070] Dioxygenases related to 2-nitropropane dioxygenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0713522 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAATTTCC CAACCCTTAA GATCGGCGAT TTGATCCCGC GTTATCCGAT CATCCAGGGC
GGAATGGCCT ACAAGGTCTC GACCGCCCCT CTCGTTTCGG CCGTGGCCAA CGCCGGCGGG
ATCGGGATCA TCGGCGCCAC CGGCATGACC GTCGACGAGT TGATCGCGGA GATCCGCAAG
ACCAGGAGCA TGACCCGGGG CATCATCGGG GTGAACGTGA TGTATGCCAT CCGGAACTTC
GCCGATCTGA TCGCTGCCTC AATAAAGGAA AAAATCGACG TTATTTTCAC GGGGGCCGGT
TTTTCCCGGG ATGTTTTTGA CTGGGGCCGG GAAGGCCGGG TACCGATAGT GTCCATCGTC
TCCTCCGCCC GGTTGGCTAA AATGGCCGAA AAACTAGGGG CCGCGGCGGT GGTCGCCGAG
AGCGGGGACG CCGGGGGGCA CCTAGGTACC GAGCGGTCGA CCGCGGAAAT CCTGCCCGAG
ATCCGTTCCG CAGTGAATAT ACCGGTGATT GCCGCGGGAG GCATCATCAG CGGGCGGGAC
ATCGCGGACA TGGTCAGGAT GGGGGCAGAT GGGGTGCAGA TGGCCACCCG TTTTGTGTTG
AGTACCGAGT GCGCCGTCTC GGACGCCTTC AAACAGCACT ACCTTAAGGC CAACGCCGAT
GACGTCATCG TCATCAAGAG CCCGGTGGGC ATGCCCGGCC GGGCGCTACG CAACACTTTC
ACCAGCCTGA TCGAACAGGG CGGCGCCATG CTGAAACCGG TGGAATGCAA GAAGTGCCTC
AAAGTCTGCT CCAAGGAGTA CTGTATCATC CAGGCTCTGG AAAACAGCCG GATCGGACTG
ATCGACCAGG GCATTGTCTT CGCCGGCAAA AACGTGTACA AGATCAAGGA TATCCTACCG
GTGAGCAAGA TCTTTGAGCG CCTGATCAGC GAATTTAAGT CGGCGTAA
|
|---|
| Protein sequence | MNFPTLKIGD LIPRYPIIQG GMAYKVSTAP LVSAVANAGG IGIIGATGMT VDELIAEIRK
TRSMTRGIIG VNVMYAIRNF ADLIAASIKE KIDVIFTGAG FSRDVFDWGR EGRVPIVSIV
SSARLAKMAE KLGAAAVVAE SGDAGGHLGT ERSTAEILPE IRSAVNIPVI AAGGIISGRD
IADMVRMGAD GVQMATRFVL STECAVSDAF KQHYLKANAD DVIVIKSPVG MPGRALRNTF
TSLIEQGGAM LKPVECKKCL KVCSKEYCII QALENSRIGL IDQGIVFAGK NVYKIKDILP
VSKIFERLIS EFKSA
|
|---|
| |