| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_3405 |
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| Symbol | |
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| ID | 3568667 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | + |
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| Start bp | 3655224 |
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| End bp | 3657008 |
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| Gene Length | 1785 bp |
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| Protein Length | 594 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637681877 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_286604 |
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| Protein GI | 71909017 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02519] pilus (MSHA type) biogenesis protein MshL |
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Plasmid Coverage information |
| Num covering plasmid clones | 49 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATCG GTTTTATCAG CGCAACGTTC GCCTCCCTTT TATTGGCCGC CTGTGCGGCC
CCCACGCCTC GCGAACCACT GAAAGGGCAC CTGAATACAG AAAGCACCGC CCCCGTTGCC
AGCGGCAGCA TTCCGGCGCC GGTGCAGCAG ACCCTGTCAC TGCCCAAACC CAAAGCGACC
CGCAAGGCCG AAACCTATAG CGTGGTGGTC AACAACGTCC CGGTCCGCGA CCTGCTGTTC
GCGCTGGCCC GCGACGCCAA GGTCAATGTC GACATCCATC CCGGCATTAC TGGCAACGTC
ACCCTGAACG CCATCGACCA GACCCTGCCA CAATTGCTGA CCCGCATATC CAAGCAGGTC
GACATGCGCT TTGAACTGGA TGGGCCGAAC CTCGCCGTCA TGCCGGACTC GCCCTTCCTG
AAGCACTACA AGGTCGATTA CGTGAATATG GCGCGTAACG TCACGGGCAC CGTGTCTGCC
AACACACAGA TCGCCACGGG CGTACCTAGC GGCGGAAGCG CTGTGCCGAC AAGCGGCGCC
AGCGGCGGAA ACATCTCGAA TACGCGCATC GAAAACTCCT CGAAGAACCA GTTCTGGGAA
TCCCTCGAGA AAAACGTCAA GGACATCCTG CGCGAAACGG ACAAGGTCTT GCCAGAGGGC
TCAAGCGAAA CGACCTACGA ACAAAACAAC GAGCAGACGG CGACTGGCGC TGCCGCCCTA
CCGCAAACCG GCCGACGTGC CGCCCAATCC ATCGCCAATG CACTGCAAGC AAATCCGGCA
CCCAGTTCAG CCAGCCAGGC AGCCGGCACG ACGCTCGTGC GCCACAGCAC TTTTCGGGAA
GCCGCCTCGG TCATCATGAA CGCCGAAAGC GGCGTCATCA CAGTGCGTGC CACCCAGAAA
CAGCATGAAC GGATACAGGA ATTTCTCGAC CGCGTGGGCA ATTCAGCCCG TCGCCAGGTA
TTGATCGAGG CGACTATCGT TGAAGTCACC CTGAAAGACG GATACCAACA AGGCATCAAC
TGGACACAAC TGGCCAGGGG AGGCACTTTC TCTTTTATCG GAGATGCTCT GACCAAGAAC
GCCACCAATC TCACCTACAC CAAAGGCGGC GATCCCAATG CTCTGGTAAC GATGCTCGAT
ACGTTTGGCA CCACAAAAGT GCTCTCCAGC CCAAGGCTTT CGGTAATGAA CAACCAGACA
GCCTTGTTGA AGGTGGTCGA AAACTATGTC TACTTCAGCG TTAAGGCCGA TACAACCACC
ACGGCCAACG TAGGAACGAC AACGGCCTAC ACCACAACGC CGCAATCGGT ATCGGTTGGA
CTCGTGGTCA GCGTTACACC GCAGATCAGT GATGGAGATG CCGTTACCCT GAACGTACGC
CCAACGATCA CCAGCGTGGC TCGTGAAGTT CAGGACCCCA ACCCGGACCT TAAGAAAAAC
AGCATCAGCA ATCTTGTCCC GGTCATCCGG ACCCGCGAAA TCGAATCAAT CATGCGGGTA
GCCAGCGGCA ATATCGCCAT TTTGGGTGGC CTGATGGAAG ACAAGATCGA CTACCAGACA
CAGCGCGTAC CGCTACTCGG CCAAATCCCG ATCGCCGGCG AACTGGTCAA CAACCGCAAC
AACGCTGCCC AAAAAACCGA ATTGGTCATT TTCCTGCGCC CCGTGGTGAT CAAGGATGCC
AGCCTGGAAG GCGACTACGC CAATATGCGC GGTTTCCTGC CAAATGACAG CTTCTTCGCC
CAGCCCAGTG AAGCCCAGCC GTTCAACATC ATCCCGAGCC GCTGA
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| Protein sequence | MKIGFISATF ASLLLAACAA PTPREPLKGH LNTESTAPVA SGSIPAPVQQ TLSLPKPKAT
RKAETYSVVV NNVPVRDLLF ALARDAKVNV DIHPGITGNV TLNAIDQTLP QLLTRISKQV
DMRFELDGPN LAVMPDSPFL KHYKVDYVNM ARNVTGTVSA NTQIATGVPS GGSAVPTSGA
SGGNISNTRI ENSSKNQFWE SLEKNVKDIL RETDKVLPEG SSETTYEQNN EQTATGAAAL
PQTGRRAAQS IANALQANPA PSSASQAAGT TLVRHSTFRE AASVIMNAES GVITVRATQK
QHERIQEFLD RVGNSARRQV LIEATIVEVT LKDGYQQGIN WTQLARGGTF SFIGDALTKN
ATNLTYTKGG DPNALVTMLD TFGTTKVLSS PRLSVMNNQT ALLKVVENYV YFSVKADTTT
TANVGTTTAY TTTPQSVSVG LVVSVTPQIS DGDAVTLNVR PTITSVAREV QDPNPDLKKN
SISNLVPVIR TREIESIMRV ASGNIAILGG LMEDKIDYQT QRVPLLGQIP IAGELVNNRN
NAAQKTELVI FLRPVVIKDA SLEGDYANMR GFLPNDSFFA QPSEAQPFNI IPSR
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