| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_3061 |
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| Symbol | |
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| ID | 3566236 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | + |
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| Start bp | 3303659 |
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| End bp | 3305515 |
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| Gene Length | 1857 bp |
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| Protein Length | 618 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637681532 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_286261 |
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| Protein GI | 71908674 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 0.004887 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.00000111191 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACCGCCT CACGCCTGCT CGAAACCATC AACAGCCCGG CCGACCTGCG CCGACTGGAC
CGCAAGCAGT TGCCACAACT GGCAAGCGAA CTGCGCGCCT TCCTGATCGA CTCGGTCTCG
AAGACCGGCG GCCACCTGTC GTCCAACCTT GGCACGGTCG AACTGACCAT CGCCTTGCAC
GCCGTCTTCA ACACACCGGA AGACCGCCTG GTCTGGGACG TCGGCCACCA GTGTTACGCC
CACAAGGTGC TGACCGGCCG CCGCGAAGGC ATGAGCACGC TGCGCATGCA CGGCGGCGTT
TCCGGCTTTC CAAAGCGCGC CGAAAGCCCC TACGACACCT TCGGCGTTGG CCACTCGTCG
ACCTCGATCT CCGCCGCGCT GGGCATGGCG CTGGCCGCCA AGCACAAGGG CGAAGACCGA
AAGGCTATCG CCATCATCGG CGATGGTGCG ATGTCCGCCG GCATGGCCTT CGAGGCCATG
AACAATGCCG GCGTTGCCGA CGCCGACATG CTGGTCATCC TGAACGACAA CGAGATGTCC
ATCTCGCCGC CGGTCGGCGC ACTGAACAAT ATCCTGACCC GCCTGACTTC CAGCAAGACC
TACAACGTCG CCCGCGAAGC CGGTCGTCAC ATGCTAGGCT TCGCCCCGCC ACTGCTCGAG
CTGGCCCGCC GCGCCGAAGA GCACGTCAAG GGCATGATCG CGCCGGGGAC ACTGTTCGAG
GAATTCGGCT TCCATTACTA CGGCCCGATC GACGGCCACG ACCTCGACGC CCTGATCCCG
ACGCTGGAAA ACCTCAAGAA GCTCAAGGGC CCGAAGTTCC TGCACGTCAT TACCAAGAAG
GGCCAGGGCT ACAAGCTGGC CGAGAACGAC CCGATTCTTT ATCACGGCGT CGGCAAGTTT
GCCGCCTGCG ATGGCATCCA GTCGGCCAAG GGCCCGGCCA AACTGACCTA CACGCAAGTT
TTCGGCGACT GGCTGTGCGA CATGGCCAAG GCCGATTCCC GCCTCGTCGG CATCACCCCG
GCCATGCGCG AAGGCTCGGG CATGGTGCGC TTCTCGGCTG AGCATGCCGA CCGCTACTTC
GATGTTGGCA TCGCCGAACA GCACGCCGTT ACGTTCGCCG CCGGTCTGGC CTGCGAAGGT
CTGAAGCCGG TCGTCGCCAT CTATTCGACC TTCCTGCAGC GCGGCTACGA CCAGCTGGTT
CACGACGTAG CCCTGCAAAA CCTGCCGGTC ATCTTCGCCG TTGACCGTGG CGGCCTGGTT
GGCGCCGATG GACCGACACA CCACGGCACC TTCGATCTGT CCTTCGTGAC CTGCATTCCG
AACATGACAG TCATGGCCCC GGCTGACGAA GCGGAATGCC GCAAGATGCT GTCGACTGCC
ATGACCATCG ATGGCCCGAG CATGGTCCGC TATCCGCGTG GGAGCGGCAC CGGCACCATC
CCGGAAGCAA AGCTCGATAC CCTGCCGGTC GGCAAGGGCG ATATCCGCCG CCGCGGCAAG
GATATCGCCC TGCTCGCCTT CGGTAGCCTT GTCGCCGCCG CCGTTGCTGC TGGTGAAGAA
CTCGATGCCA CCGTCGCCAA CATGCGCTTC ATCAAACCGC TCGATGCAGA CCTGATTGTT
GAACTGGCCG GGAACCATTC CCTGCTGGTC AGTATCGAAG AGAATGCCGT AATCGGTGGC
GCCGGCTCGG AAATCGAGCG GGTGCTGGCG GAACGCGGGC TTCAGGTGCC GGTATTGCGC
CTCGGCTTGC CGGACCGCTT CATCGACCAC GGCGAACAAG GCCAGTTGCT GGCCGAACTT
GGCCTCGACA AGGAAGGCAT CGTGCGCGCC GTGCGTGCCC GAACCAACCC ACAATAA
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| Protein sequence | MTASRLLETI NSPADLRRLD RKQLPQLASE LRAFLIDSVS KTGGHLSSNL GTVELTIALH
AVFNTPEDRL VWDVGHQCYA HKVLTGRREG MSTLRMHGGV SGFPKRAESP YDTFGVGHSS
TSISAALGMA LAAKHKGEDR KAIAIIGDGA MSAGMAFEAM NNAGVADADM LVILNDNEMS
ISPPVGALNN ILTRLTSSKT YNVAREAGRH MLGFAPPLLE LARRAEEHVK GMIAPGTLFE
EFGFHYYGPI DGHDLDALIP TLENLKKLKG PKFLHVITKK GQGYKLAEND PILYHGVGKF
AACDGIQSAK GPAKLTYTQV FGDWLCDMAK ADSRLVGITP AMREGSGMVR FSAEHADRYF
DVGIAEQHAV TFAAGLACEG LKPVVAIYST FLQRGYDQLV HDVALQNLPV IFAVDRGGLV
GADGPTHHGT FDLSFVTCIP NMTVMAPADE AECRKMLSTA MTIDGPSMVR YPRGSGTGTI
PEAKLDTLPV GKGDIRRRGK DIALLAFGSL VAAAVAAGEE LDATVANMRF IKPLDADLIV
ELAGNHSLLV SIEENAVIGG AGSEIERVLA ERGLQVPVLR LGLPDRFIDH GEQGQLLAEL
GLDKEGIVRA VRARTNPQ
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