| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_2134 |
|---|
| Symbol | |
|---|
| ID | 3567550 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | + |
|---|
| Start bp | 2303454 |
|---|
| End bp | 2304449 |
|---|
| Gene Length | 996 bp |
|---|
| Protein Length | 331 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637680605 |
|---|
| Product | thiosulphate-binding protein |
|---|
| Protein accession | YP_285345 |
|---|
| Protein GI | 71907758 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1613] ABC-type sulfate transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR00971] sulfate/thiosulfate-binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 3.73195e-21 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.000103932 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGCGCAAGA TTGGCCTTTT CGCTGCACTG ACTCTCGCTT TCGGCCTCGG TAGCGCCGCT
GCCCAGACCA CGCTGCTCAA TGTCTCCTAC GACCCGACGC GTGAGTTGTA CAAGGACTTC
AACGCTGCCT TTGCCAAGCA ATGGCAGGCC AAGACCGGCC AGATCGTTAA CGTCCGCCAG
TCACACGGCG GTTCCGGCAA GCAGGCCCGT TCGGTGGCCG ACGGTCTGGA AGCCGATGTG
GTCACCCTGG CCCTTGGCTA CGACATCGAT GCCCTGGCCG AGCGGAAGCT GATCCCCGCC
GATTGGCAGA AGCGCTTCCC GAACAACTCC TCGCCCTATA CCTCGACCAT TGTCTTCCTG
GTCCGCAAGG GCAACCCGAA AGCGATCAAG GACTGGGGTG ATCTGGCCAA GCCAGGCGTC
GCGGTCATCA CACCGAACCC GAAGACTTCG GGCGGTGCCC GCTGGAACTA TCTGGCGGCC
TGGGCCTGGG CGTTGAAACA ACCCGGTGGC AATGAGCAAA AGGCCAAGGA TCTGGTCAGC
GCAATATTCA AGAACGTGCC GGTCCTCGAT TCCGGCGCCC GTGGTTCGAC CACCACCTTC
GTCGAGCGAG GCCTGGGTGA TGTGCTGATC GCCTGGGAGA ACGAAGCCAT TCTGGCGGTG
ACGGAACTGG GCAAGGACAA GTTCGAGATC GTCGCGCCGA GCCTGTCCAT CCTGGCCGAA
CCACCGGTCG CGGTCGTCGA CAAGGTCGTC GAGAAGCGCG GCACGCGGCT GACAGCGCAG
GCCTATCTCG ATTACCTGTA TTCCGAAGAA GGCCAGCAGA TCGCTGCCAA GCACTACTAC
CGGCCGAGCA ACGCCAAGGT GGCGGCCAAG TACGCGGCCA TTTTCCCGAA ACTGAAACTG
GTCACCATCA ACGACAGCTT CGGCGGTTGG CAGAAAGCGC AGAAAACGCA CTTCGCCGAT
GGTGGCACCT TCGACCAGAT CTATCTGAAG AAATAA
|
|---|
| Protein sequence | MRKIGLFAAL TLAFGLGSAA AQTTLLNVSY DPTRELYKDF NAAFAKQWQA KTGQIVNVRQ
SHGGSGKQAR SVADGLEADV VTLALGYDID ALAERKLIPA DWQKRFPNNS SPYTSTIVFL
VRKGNPKAIK DWGDLAKPGV AVITPNPKTS GGARWNYLAA WAWALKQPGG NEQKAKDLVS
AIFKNVPVLD SGARGSTTTF VERGLGDVLI AWENEAILAV TELGKDKFEI VAPSLSILAE
PPVAVVDKVV EKRGTRLTAQ AYLDYLYSEE GQQIAAKHYY RPSNAKVAAK YAAIFPKLKL
VTINDSFGGW QKAQKTHFAD GGTFDQIYLK K
|
|---|
| |