| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_2037 |
|---|
| Symbol | |
|---|
| ID | 3566755 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | + |
|---|
| Start bp | 2187567 |
|---|
| End bp | 2188214 |
|---|
| Gene Length | 648 bp |
|---|
| Protein Length | 215 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637680508 |
|---|
| Product | uracil-DNA glycosylase superfamily protein |
|---|
| Protein accession | YP_285252 |
|---|
| Protein GI | 71907665 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1573] Uracil-DNA glycosylase |
|---|
| TIGRFAM ID | [TIGR00758] uracil-DNA glycosylase, family 4 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 50 |
|---|
| Plasmid unclonability p-value | 0.161308 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAAGAT TTCAAGATCC CACCAACTGC ATCGCCTGTT CACGGCTGGC GGAACACCTG
GCCACCATTC GTCAACGCGA CCCTGACTGG CATGCCTTGC CGGTTCCCGC CTTCGGCTCT
CTGGATGCTG AATTGCTCGT CGTCGGCCTC GGCCCGGGCG AAAAAGGAGC CAATCGAACC
GGACGTCCAT TTACTGGCGA CGTCGCCGGC GAGTTGCTCT ACCCGGCACT GCATCGCTTC
GGATTTGCCA GTAGTCCGGA ACCGCTTGGG TCTGATGGCT GGGCCAATCC GACGATGCAA
CTTACTAATT GCCGCATCAC TAACGCCGTG CGCTGCCTGC CGCCGGCCAA CAAGCCAACG
ACGGCGGAAA TTCGCCAGTG CAATGCCCAC CTGAAGGCCG AACTGGCAGC CATGCCGAAG
TTGAAGATCA TCGTTGTCCT GGGGGCCATT GCCCATCAGG CATTACTCTG GACGTACGGA
CTCAAGGCAA AAGACTTGCC ATTTGGCCAC CATGTCACCC ACAAGCTGCC GGATGGGCGA
ACACTGGTCA CCAGCTACCA TTGCAGCGGC TATAACTGGC GTACCGGACG ACTGACACGA
GAGAGCTTTG AAGCGGTCTT TGCAGGGGTC AAGGCACATC TCGCCTAA
|
|---|
| Protein sequence | MSRFQDPTNC IACSRLAEHL ATIRQRDPDW HALPVPAFGS LDAELLVVGL GPGEKGANRT
GRPFTGDVAG ELLYPALHRF GFASSPEPLG SDGWANPTMQ LTNCRITNAV RCLPPANKPT
TAEIRQCNAH LKAELAAMPK LKIIVVLGAI AHQALLWTYG LKAKDLPFGH HVTHKLPDGR
TLVTSYHCSG YNWRTGRLTR ESFEAVFAGV KAHLA
|
|---|
| |