Gene Daro_1107 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaro_1107 
Symbol 
ID3569380 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDechloromonas aromatica RCB 
KingdomBacteria 
Replicon accessionNC_007298 
Strand
Start bp1208939 
End bp1210714 
Gene Length1776 bp 
Protein Length591 aa 
Translation table11 
GC content42% 
IMG OID637679569 
Producthypothetical protein 
Protein accessionYP_284333 
Protein GI71906746 
COG category[L] Replication, recombination and repair 
COG ID[COG3593] Predicted ATP-dependent endonuclease of the OLD family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.0000952777 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.36043 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGTCC TTCGTATAAC CAGTGTTCGA TTTAGTAGAT ATAAGGCTTT CGATGATTTT 
CAAATAGCCC TGCAGGATTT TAATGTCTTG GTTGGGCCAA ATAACGCAGG GAAGTCCACG
ATTATCAGTG CATTTCGTAT TTTGGCAGAG GGGATGCGGC GTGCAAGAGC AAGAAGTCCG
GAGCGAATTG ATGTACCCAC CTTTTCCGGC TTGGGTTACA GGATAAACAT AAATGAACTC
CCGATTGCTT CGGAAAACAT CTTCTTTGAT TATGACGATA GCACCCCAGC TCAGATCAAG
TTCCGACTTT CAAATGGAAA CCATCTAAGG CTTTTATTTC CAGAGCAGCG GTCATGTATT
TTGATTGCTG AGTCCAATGG AAAACTTCCT CGCACCCCTT CTCAATTTAA GGCTGATTTT
GACTTTGAGA TTGGTTTTGT CCCAATTCTA GGCCCTGTGG ATCAGAAAGA GTCGCTATAT
GCGAAAGAAG CTGCCCGTTT GGCGCTATTA ACATCAGGTG CCTCCAGAAA TTTCAGAAAC
ATTTGGTATC ATTACCCTGA AGGTTTTGAC TCATTTCGCC AACTGATAAA AACAACTTGG
CCAGGGATGG ATATTGAACC TCCTGAGCTA TCTCCAAATC ATCGTGATCT TGCTATGTTT
TGCCCAGAAG ATCGCCACCC TCGTGAAATA TGTTGGGCAG GCTACGGATT TCAAGTTTGG
TGTCAGATGC TGACTCACGT CGTAAAAGCG TCAAAAGCAT CTTTACTAGT TATCGATGAA
CCAGATATTT ACCTTCACTC TGACCTCCAG CGTCAATTGG TTTCACTGCT GCGTGAATTA
GGGCCAGATA TTCTAATTGC CACTCATTCA ACAGAAATAA TTGTTGAATG CGAACCAAAC
AATCTCGTTA ATATTAGCAA GAAAAACAAG AGCGCTCAGC GCGTAAAGGA CATCTCACAG
CTTAAGCTTG TATTCTCAGC CCTTGGTTCT AATCTGAATC CAATTCTTAC TCAGCTCTCC
AAAACAAAAC GTGTGGTTTT TGTTGAAGGG CTTGATTTTC AAATTATTAG CGTCTTTGCA
AGGGTACTTG GTTATCAAAG AGTGGCCAAT CGTTCAGATT TTGCAGTTGT AAAAATTGAA
GGATTCAATC CAAAGAGAGC TGTTGACCTT ACTTCCGGCA TTGAAGCTAC TGTAGGTAGT
AACATTGCGC GCGCTGTTAT TCTTGATCGA GACTATAGAC CAGAGTCAGA AATTATTGAC
GTAACGAAAG AACTGCAAAA ACATGGATTT ATGGCTCATA TCCACAAACG CAAGGAAATT
GAAAATTATC TTCTGGATAA AAATGCATTG GAACGTGCAA TTGATTCCCG TTTGATCGAA
CGAGCTCGAC GATCTGGAAC AGCAAAACAA GAATTGCCAG ATGTCGAAAA AATTATCGAA
GATGCGATGA AAACGTGCAA GCATTCAGTA TTTGGACAAA TTCAAGCTAG AGCAGTAGAG
TTTTCTCGGA AGAAAACACC TCATATTGAT CAAGCCACAA TTACTGAGGA AATTTCTAGA
GAATTTGAAG AACAGTGGTC CTCTAGTGCA GGCCGCTTAG CCTTGGTACC GGGAAAAGAA
GTATTAGCAT CAATTAATGC TGCGCTTCAG TCATCTGTCG GAATTTCGGT ATCTGATGGT
CAGATCGTGG GAAGTTTCAA GCCGACTGAG GTACACCAAG ACATTAAGAA CCTTATCGAT
GAATTAGGAA AATTCTCAAC ATCCAATAAC CAATAG
 
Protein sequence
MAVLRITSVR FSRYKAFDDF QIALQDFNVL VGPNNAGKST IISAFRILAE GMRRARARSP 
ERIDVPTFSG LGYRININEL PIASENIFFD YDDSTPAQIK FRLSNGNHLR LLFPEQRSCI
LIAESNGKLP RTPSQFKADF DFEIGFVPIL GPVDQKESLY AKEAARLALL TSGASRNFRN
IWYHYPEGFD SFRQLIKTTW PGMDIEPPEL SPNHRDLAMF CPEDRHPREI CWAGYGFQVW
CQMLTHVVKA SKASLLVIDE PDIYLHSDLQ RQLVSLLREL GPDILIATHS TEIIVECEPN
NLVNISKKNK SAQRVKDISQ LKLVFSALGS NLNPILTQLS KTKRVVFVEG LDFQIISVFA
RVLGYQRVAN RSDFAVVKIE GFNPKRAVDL TSGIEATVGS NIARAVILDR DYRPESEIID
VTKELQKHGF MAHIHKRKEI ENYLLDKNAL ERAIDSRLIE RARRSGTAKQ ELPDVEKIIE
DAMKTCKHSV FGQIQARAVE FSRKKTPHID QATITEEISR EFEEQWSSSA GRLALVPGKE
VLASINAALQ SSVGISVSDG QIVGSFKPTE VHQDIKNLID ELGKFSTSNN Q