Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daro_1107 |
Symbol | |
ID | 3569380 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dechloromonas aromatica RCB |
Kingdom | Bacteria |
Replicon accession | NC_007298 |
Strand | - |
Start bp | 1208939 |
End bp | 1210714 |
Gene Length | 1776 bp |
Protein Length | 591 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 637679569 |
Product | hypothetical protein |
Protein accession | YP_284333 |
Protein GI | 71906746 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG3593] Predicted ATP-dependent endonuclease of the OLD family |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.0000952777 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.36043 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCTGTCC TTCGTATAAC CAGTGTTCGA TTTAGTAGAT ATAAGGCTTT CGATGATTTT CAAATAGCCC TGCAGGATTT TAATGTCTTG GTTGGGCCAA ATAACGCAGG GAAGTCCACG ATTATCAGTG CATTTCGTAT TTTGGCAGAG GGGATGCGGC GTGCAAGAGC AAGAAGTCCG GAGCGAATTG ATGTACCCAC CTTTTCCGGC TTGGGTTACA GGATAAACAT AAATGAACTC CCGATTGCTT CGGAAAACAT CTTCTTTGAT TATGACGATA GCACCCCAGC TCAGATCAAG TTCCGACTTT CAAATGGAAA CCATCTAAGG CTTTTATTTC CAGAGCAGCG GTCATGTATT TTGATTGCTG AGTCCAATGG AAAACTTCCT CGCACCCCTT CTCAATTTAA GGCTGATTTT GACTTTGAGA TTGGTTTTGT CCCAATTCTA GGCCCTGTGG ATCAGAAAGA GTCGCTATAT GCGAAAGAAG CTGCCCGTTT GGCGCTATTA ACATCAGGTG CCTCCAGAAA TTTCAGAAAC ATTTGGTATC ATTACCCTGA AGGTTTTGAC TCATTTCGCC AACTGATAAA AACAACTTGG CCAGGGATGG ATATTGAACC TCCTGAGCTA TCTCCAAATC ATCGTGATCT TGCTATGTTT TGCCCAGAAG ATCGCCACCC TCGTGAAATA TGTTGGGCAG GCTACGGATT TCAAGTTTGG TGTCAGATGC TGACTCACGT CGTAAAAGCG TCAAAAGCAT CTTTACTAGT TATCGATGAA CCAGATATTT ACCTTCACTC TGACCTCCAG CGTCAATTGG TTTCACTGCT GCGTGAATTA GGGCCAGATA TTCTAATTGC CACTCATTCA ACAGAAATAA TTGTTGAATG CGAACCAAAC AATCTCGTTA ATATTAGCAA GAAAAACAAG AGCGCTCAGC GCGTAAAGGA CATCTCACAG CTTAAGCTTG TATTCTCAGC CCTTGGTTCT AATCTGAATC CAATTCTTAC TCAGCTCTCC AAAACAAAAC GTGTGGTTTT TGTTGAAGGG CTTGATTTTC AAATTATTAG CGTCTTTGCA AGGGTACTTG GTTATCAAAG AGTGGCCAAT CGTTCAGATT TTGCAGTTGT AAAAATTGAA GGATTCAATC CAAAGAGAGC TGTTGACCTT ACTTCCGGCA TTGAAGCTAC TGTAGGTAGT AACATTGCGC GCGCTGTTAT TCTTGATCGA GACTATAGAC CAGAGTCAGA AATTATTGAC GTAACGAAAG AACTGCAAAA ACATGGATTT ATGGCTCATA TCCACAAACG CAAGGAAATT GAAAATTATC TTCTGGATAA AAATGCATTG GAACGTGCAA TTGATTCCCG TTTGATCGAA CGAGCTCGAC GATCTGGAAC AGCAAAACAA GAATTGCCAG ATGTCGAAAA AATTATCGAA GATGCGATGA AAACGTGCAA GCATTCAGTA TTTGGACAAA TTCAAGCTAG AGCAGTAGAG TTTTCTCGGA AGAAAACACC TCATATTGAT CAAGCCACAA TTACTGAGGA AATTTCTAGA GAATTTGAAG AACAGTGGTC CTCTAGTGCA GGCCGCTTAG CCTTGGTACC GGGAAAAGAA GTATTAGCAT CAATTAATGC TGCGCTTCAG TCATCTGTCG GAATTTCGGT ATCTGATGGT CAGATCGTGG GAAGTTTCAA GCCGACTGAG GTACACCAAG ACATTAAGAA CCTTATCGAT GAATTAGGAA AATTCTCAAC ATCCAATAAC CAATAG
|
Protein sequence | MAVLRITSVR FSRYKAFDDF QIALQDFNVL VGPNNAGKST IISAFRILAE GMRRARARSP ERIDVPTFSG LGYRININEL PIASENIFFD YDDSTPAQIK FRLSNGNHLR LLFPEQRSCI LIAESNGKLP RTPSQFKADF DFEIGFVPIL GPVDQKESLY AKEAARLALL TSGASRNFRN IWYHYPEGFD SFRQLIKTTW PGMDIEPPEL SPNHRDLAMF CPEDRHPREI CWAGYGFQVW CQMLTHVVKA SKASLLVIDE PDIYLHSDLQ RQLVSLLREL GPDILIATHS TEIIVECEPN NLVNISKKNK SAQRVKDISQ LKLVFSALGS NLNPILTQLS KTKRVVFVEG LDFQIISVFA RVLGYQRVAN RSDFAVVKIE GFNPKRAVDL TSGIEATVGS NIARAVILDR DYRPESEIID VTKELQKHGF MAHIHKRKEI ENYLLDKNAL ERAIDSRLIE RARRSGTAKQ ELPDVEKIIE DAMKTCKHSV FGQIQARAVE FSRKKTPHID QATITEEISR EFEEQWSSSA GRLALVPGKE VLASINAALQ SSVGISVSDG QIVGSFKPTE VHQDIKNLID ELGKFSTSNN Q
|
| |