| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_0706 |
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| Symbol | |
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| ID | 3569018 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | + |
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| Start bp | 773782 |
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| End bp | 775692 |
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| Gene Length | 1911 bp |
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| Protein Length | 636 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637679154 |
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| Product | Type I secretion outer membrane protein, TolC |
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| Protein accession | YP_283932 |
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| Protein GI | 71906345 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 57 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0676668 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCACGCTG CAACGCTCAA GGAAGAGGCT TTTTCAACCG AGTTTACAAG TGCCAATATG
AAATACAACG CCGTTGCTTC ACTTTTCCTG GCAGCTGCCA TGCCGGCTAT CGCTCAGATT
CCGTCCGTAT CGAACCCGGC TCTGGCAACA TTGAAGGATG TCGCCCAAAG AGCCGTCCTG
AATAGCCCGG AAGTGACCTC CAAATGGCAC AATTACAAAG CGGCCGATGA AGAAATCGGT
GTGGCGCGCG GCGGCTATTT TCCCCGCGTT GACCTGACAG CCGGTTCGGG GCGCGAGAGC
CTGCGCCAGC CGTCGACAGC TGACCGCGAC TACACTCGCA GCGGATACAT GCTGAGCCTG
AACCAGATGC TGTTCGATGG CTTTGCCACG CGCAACGAGG TTCGTCGGCT CGACAAGGCT
AAGCTGGTTC GTTACTACGA GTTGCTCGAT GCCTCCGAAA ATGTCGCGCT CGAAGCCGGG
CGTGCTTATC TCGATGTGCT GCGTTACCGC CTCCTGGTCG ATCTCGCCAA GGATAACTAC
GTCCAGCACA AGGCGACCTA CGACCAGATC CAGCGTCGCA CCCAGAGTGG TGTTGGCCGT
CGGGTGGACT TTGAGCAGGC CGGCAGCCGT CTTGCCCTGG CCGAAATCAA TCTGCTTACC
GAAAACGCCA ATTTGCATGA CGTGACCGCT CGCTTCCAGC GCCTGGTCGG CGCCCAGCCG
GATGGCGCCA TTGTCGCGCC GACCTTGGTC AGCACCGCCT TCCCAACGCA GGCCAAGGTG
GCGCTTGATA CCCTGCACAA AAAGAATCCG GCGCTGCTGG CTGCTACCGA AAACATCGAA
GCCGCCCAGT ATGAAATCAA TACCCGGCGC GCCGCCTATT CACCGAAGCT CGACTTCCGC
GCCCGTACCG ACCAGACCAA GAACTATCTG GGGGATACCG GTCAGCGCGA CTATAACGTG
GCCGAACTTG TCGTTAGCTG GAACCTCTTC AATGGCGGTT CCGACCGCGC TCGTGAAAAA
CAGACCATCG AGAAAAAGAA CCTGGCGTTC GATCTTCGTG AAAAAGCTTG TCGCGATACC
AGGCAGACCC TGCTCATCGC CTATAACGAC GTTCTGCGTC TCAAGGAGCA GTCGGTTCAT
CAGGCACGTC AGGTTGTCCT CCTCGAAAAG ACTCGTGATG CCTACCGCGA TCAGTTCAAT
GTTGGACAAC GCACCCTGCT TGACCTGCTC GATACCGAAA ACGAACTGTT GTCTGCCCGT
CGCTCAGCCG CCAATGCCAA CACCGACCTG ACTTTGGCTT ATCTGCGGAC CTATGCCGGC
ATGGGGACGC TGCTTGAATA CCTCGGTCTC CAGCGTCTCG ATGCGGAAAC TCCGGATGCC
AAGGATCTGG CTGAAATCGA TCCGGCTCAG CTTTGCCCGA ACGACCCGAT TGCCTTGAGC
CAGCCGGACC GCGAGGAGCT GAATGCCAAG GCGGCCGCAC TGAATGCCGC CAAGCCGATG
GTCATGCCGG TGCCGGTTAC GATAGGCGGC GAGGCCGATA TCCAGAATCA GGTCAGGTCT
TGGGCTGCTG CGTGGTCTGC TCGCGACTAC TCAGCTTACG CCGCTTTCTA TGCGCCGACC
TTTACGCCGG ATGGTGGCCT TTCACGTGAG GACTGGGCGC AACTTCGTCG CAGCCGTATT
ACCGCTCGCG GTGAAATCAA CGTCGATGTG CAGGAGTTGA AAGTCCGTAT GGATGGAAAT
GACCGTGCTT TTGTCGAGTT CCGCCAGATT TATCAATCGA ATGCTTACCG CGATACTACC
CAGAAGACCC TTGAAATGAT CCGGGTTGGC GGCAAGTGGC TGATCAACCG CGAAAGCTCT
GTCCCTTGTG CCGGAAATAC CGTCGGCGGC TGCAAGGGGC TAATTCGCTA A
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| Protein sequence | MHAATLKEEA FSTEFTSANM KYNAVASLFL AAAMPAIAQI PSVSNPALAT LKDVAQRAVL
NSPEVTSKWH NYKAADEEIG VARGGYFPRV DLTAGSGRES LRQPSTADRD YTRSGYMLSL
NQMLFDGFAT RNEVRRLDKA KLVRYYELLD ASENVALEAG RAYLDVLRYR LLVDLAKDNY
VQHKATYDQI QRRTQSGVGR RVDFEQAGSR LALAEINLLT ENANLHDVTA RFQRLVGAQP
DGAIVAPTLV STAFPTQAKV ALDTLHKKNP ALLAATENIE AAQYEINTRR AAYSPKLDFR
ARTDQTKNYL GDTGQRDYNV AELVVSWNLF NGGSDRAREK QTIEKKNLAF DLREKACRDT
RQTLLIAYND VLRLKEQSVH QARQVVLLEK TRDAYRDQFN VGQRTLLDLL DTENELLSAR
RSAANANTDL TLAYLRTYAG MGTLLEYLGL QRLDAETPDA KDLAEIDPAQ LCPNDPIALS
QPDREELNAK AAALNAAKPM VMPVPVTIGG EADIQNQVRS WAAAWSARDY SAYAAFYAPT
FTPDGGLSRE DWAQLRRSRI TARGEINVDV QELKVRMDGN DRAFVEFRQI YQSNAYRDTT
QKTLEMIRVG GKWLINRESS VPCAGNTVGG CKGLIR
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