| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_0394 |
|---|
| Symbol | |
|---|
| ID | 3569865 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dechloromonas aromatica RCB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007298 |
|---|
| Strand | + |
|---|
| Start bp | 434949 |
|---|
| End bp | 437384 |
|---|
| Gene Length | 2436 bp |
|---|
| Protein Length | 811 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637678836 |
|---|
| Product | Rhs element Vgr protein |
|---|
| Protein accession | YP_283623 |
|---|
| Protein GI | 71906036 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 46 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.787309 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGATCTTCG CCGACAGCCA GCGCTTTCCC GAAGACATCG TTTCCCAATC GGCCAATGGC
GGCCAGGGCA TCCGCTACCA CCGGGCCGAT TCGCAAGAGG ATCAGGACGC CATCCTCGCC
TTCGGTGAAC GCCACCGCCT GGCCAGCTCG GTGATCAGCG CCATCACCTA CGACTACAAA
GCCAAGAAGA ACGTCACCCT CAACATCACC AGCGCCCAGC CCATCGGCGG CAAGAACGCC
CCGGTCCTCG AAAGCCACGA CCACCCCGGC CTCTACGCCT GGGCCAATGC AGCCGAAGCC
GAACGCTATG GCCGGCTGGC CATGGAAGCC CGCGAGGCCG GGCATCGCAC CTGGCTGGGT
CGCAGCACCG TGCGCAGCCT GCGTCCCGGC ACCGTCTTTG ACCTGATCGG CCTGCCCATC
GATCCCGCCA AGGCCGACGC CGAACACCGG TACGCCGCCA CCGACATCAC CCACCTCGGC
ATCAATAACC TGAGCGGCGA AGCCATCGCC ACCATCGCCC AACGCCTCGG GCAAGGCGCC
CAGAAGATCG ACGCCAGCGA TGCTCTGGCG ACCGGTGATG CCCTGACCCC GATCAGTGCT
CCGCCCAGCC TCCCGACTGA ACTCCTCAAG CTCGCCGTCG AGCGCGGCTA CGGCAACACC
TTCGACGCTC ACGCCGCCAA CGTCCCGTGG CGCCCCGAAC TCGAAGACCG TTCCGGTGCC
CGGATCAATC CCCGGCCCAC CGCACCCGGC CCGATGAGCG CCCTCGTCGT TGGTCCCGAA
GGCCAAACCA GCCCTAGCGG CCCCGACGAA CTCTGGTGCG ATGCCCTCGG CCGCGTCAAG
ATCCGCTTCC ACTGGCAACA AGCTGAAACC CCGGATGATC GTGACTCCTG CTGGGTCCGC
GTCCTCAGCC GGCAAGCCGG CCCCGGCATG GGCTGGCAAT GGCTCCCCCG CATCGGCCAG
GAAGTCCTCG TCGACTTCGT CGGCGGCGAC ATCGACCGCC CCTACCTGCT CGGCGCCCTC
TACAACGGCC AGGGGGAGGG CGGCATCAGC GCCACCCCGG GTGGCGACAG CACCAAAACC
CAGGCTGACA ACGTCTTCGA TAGCGCCAGC GACCACCGCC CGAGCGGCCA GGGCAACACC
GCCGGCGGCA ACAGCCCCGC CTGGCACGGC GCCGCCGAAA CCAGCCACCG CCACAGCGCC
GCCCTCACCG GCTTCAAGAG CAAGGAATTC GGCAGCGCCA GCGGCTACAA CCAACTGCTC
CTCGACGACA GCGACCAACA ACAACGCCTG CAACTCAAGA GCACCCAACA CCACAGCGAA
CTCAACCTCG GCCACCTCAT CCACCAGGCC GACAACTACC GTGGCTCCTT CCGCGGCACC
GGCACGGAGT TGCGCACGGA CGCCTGGGGC GCCCTGCGTG GCGGCCAAGG CCTGGTCATG
ACCACCTGGG CTCACCCGTC CGCCGGTGCA TCGACGGCAC AACCGGCCGG CGACATGGCC
CCGGCCATGG CCCTGCTCAG GCAAGCTGAT ACCCTCGCCA GAACCCTTAA CCAGGCCGCC
GCCACCCACC AGACCGTCCA ACTCTCAAGC GCCATCGGCA CCCAGGGCAA AGACCAAAGC
AGGATCGACC CCGAAGCCGC ACCGCTCAAA GCGCTGCACA AAGTCTCCAG CGGCATGGTC
GACGCCAAGG ATCAAAGCGC CGCCAAGCAA GACGCCCAAC AAAAAATCAC CAACGCCAGC
CCCGACAAAC GCCCGCACCT CACCGACCCC GCCATCGTCC AGACCGGCAA AGCCGGCATC
GGCCACGTCG CCGGACAAAA CCTGCAATAC ACCAACGGCG AAACCCTGGT CTTCGAAAGT
GGTGAAGACA CCAACCTCGC CATTGCCGGC AAAGCCAGAA TCCACAGCGG TCAAGCCATC
GGCCTGCTGG CAGGTGCGAT CAATCCCGGC GACGGCAATA CCGGCCTCAA ACTGATCGCT
TCCAAGGACG ACATCGACCT GCAAGCCCAA AGCGACGAAA TGAAGTTCCT GGCCAAGAAA
GACATCAAAC TCGTTTCCGC CACCCAGCAC ATCGACTTCG CGGCAGCCAA GAAGATCCAC
CTCGCCGTAC AAGGCGGGGC GAGCATCACC ATCGACGGCG GCATCACCGT ACAGTGCCCG
GGGACGATGA CGGTGCATGC GAGCAAGAAG TCGTTTGCGG GGCCGGAACA GCAGAACTAC
GGATTGCCAC GGTTCCCGGA AAATCCATTT GAAACTACGC CTCCAAAATT TGATTTCAAG
CTGACCGATA TGCCAGGGCC GGATGGCGCG GTATTGAGCG AAACTTCTTG GCGAATGGTG
TTGGCGGCAG ACGAAAGTGA AGCGTTAACC CATTCGGCAA CACTTATGTC CGGCCAAAGC
GATGCTCAGG GGATGCTTGC GCTATCTTCA GACTAG
|
|---|
| Protein sequence | MIFADSQRFP EDIVSQSANG GQGIRYHRAD SQEDQDAILA FGERHRLASS VISAITYDYK
AKKNVTLNIT SAQPIGGKNA PVLESHDHPG LYAWANAAEA ERYGRLAMEA REAGHRTWLG
RSTVRSLRPG TVFDLIGLPI DPAKADAEHR YAATDITHLG INNLSGEAIA TIAQRLGQGA
QKIDASDALA TGDALTPISA PPSLPTELLK LAVERGYGNT FDAHAANVPW RPELEDRSGA
RINPRPTAPG PMSALVVGPE GQTSPSGPDE LWCDALGRVK IRFHWQQAET PDDRDSCWVR
VLSRQAGPGM GWQWLPRIGQ EVLVDFVGGD IDRPYLLGAL YNGQGEGGIS ATPGGDSTKT
QADNVFDSAS DHRPSGQGNT AGGNSPAWHG AAETSHRHSA ALTGFKSKEF GSASGYNQLL
LDDSDQQQRL QLKSTQHHSE LNLGHLIHQA DNYRGSFRGT GTELRTDAWG ALRGGQGLVM
TTWAHPSAGA STAQPAGDMA PAMALLRQAD TLARTLNQAA ATHQTVQLSS AIGTQGKDQS
RIDPEAAPLK ALHKVSSGMV DAKDQSAAKQ DAQQKITNAS PDKRPHLTDP AIVQTGKAGI
GHVAGQNLQY TNGETLVFES GEDTNLAIAG KARIHSGQAI GLLAGAINPG DGNTGLKLIA
SKDDIDLQAQ SDEMKFLAKK DIKLVSATQH IDFAAAKKIH LAVQGGASIT IDGGITVQCP
GTMTVHASKK SFAGPEQQNY GLPRFPENPF ETTPPKFDFK LTDMPGPDGA VLSETSWRMV
LAADESEALT HSATLMSGQS DAQGMLALSS D
|
|---|
| |