Gene Daci_6006 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_6006 
Symbol 
ID5751637 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp6711732 
End bp6712466 
Gene Length735 bp 
Protein Length244 aa 
Translation table11 
GC content73% 
IMG OID641301148 
ProductMotA/TolQ/ExbB proton channel 
Protein accessionYP_001567019 
Protein GI160901437 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0811] Biopolymer transport proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones41 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value0.819621 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGGTC CACTCTGGCT CTGGTGGCAG CAAGGCGACG CCGTGGCGCG CGGCACGGCG 
CTGCTGCTGC TGGCGCTGTC GGTGGCCAGC TGGGTGGTCA TCGTCTGGAA GATCTGGTTC
ATGGCCGCCA GCCGCCGCCG CGTTCCACAG GCCATTGCGG CCTTCTGGAG TGCGCCGGAC
CTGGCCACGG GTCAGGCCCG CATGGCCGAG GGCGATCGCC AGCAACTGGT GGCGCCCATG
GCCGGGGCCG TATCCCAGGC CCTCGCGCCC ACGGGCAGCA GCGGCATGGC GCTCTCGGGG
CGCGCAGCGC GCTCCGTGCG CCTCACGCGC GGCCTGCGCC AGGCGCTGCA GTCGGCCAGC
CACCAGCTTC AATGGGGCCA GACCCTGCTG GCCACCGTGG GCGCCACGGC GCCCTTCGTC
GGCCTGCTGG GCACCGTCTG GGGCATACAC CACGCGCTGG CCACGCTGGC CGGCAGCGGA
CAGATCGGCA TCGAGCAACT GGCCGGCCCT GTGGGCGAGG CCCTGGTGAT GACGGCAGCC
GGCCTGGCCG TGGCCCTGCC AGCCGTGCTG GCCTATAACC TGCTGGGCCG CGCCGCCGCC
CAGATGGAAG CCCTGCTCGA AGGCTTTGCC CATGACCTGC AGGCCATGTT CGGCCTGGAG
CAGCCCGGGC AGGTGCAGCC GGATGACGGC ATGCCCGTCG CCGGCCTGCC GGCCGGCCCC
ATGGACGCGC CCTGA
 
Protein sequence
MTGPLWLWWQ QGDAVARGTA LLLLALSVAS WVVIVWKIWF MAASRRRVPQ AIAAFWSAPD 
LATGQARMAE GDRQQLVAPM AGAVSQALAP TGSSGMALSG RAARSVRLTR GLRQALQSAS
HQLQWGQTLL ATVGATAPFV GLLGTVWGIH HALATLAGSG QIGIEQLAGP VGEALVMTAA
GLAVALPAVL AYNLLGRAAA QMEALLEGFA HDLQAMFGLE QPGQVQPDDG MPVAGLPAGP
MDAP