| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5945 |
|---|
| Symbol | |
|---|
| ID | 5751566 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 6625940 |
|---|
| End bp | 6627226 |
|---|
| Gene Length | 1287 bp |
|---|
| Protein Length | 428 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641301077 |
|---|
| Product | TRAP dicarboxylate transporter, DctM subunit |
|---|
| Protein accession | YP_001566958 |
|---|
| Protein GI | 160901376 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
|---|
| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTATCA CGCTTTTCAT CGCCATCGTC GTCCTGCTCA CGCTGGGCTT TCCGGTGGCC
TTCGCGCTGG CGATCTCCGC TGCGCTGGCC GTCTTCGTGG GGGGCCGCTA TCCGCAGCTC
ATCGTGTTCA AGGAGATGTT CACGGGCATA GACAGCTTTC CGCTGATGGC CGTGCCCTTC
TTCATCCTGG CGGCCGAGCT GATGTCGGGC GGGGCGCTCA CGCATGTGCT GCTGCGCTTT
GCAGCGCAGT TCGTGGGCCA TCTGCGCGGC GGCCTGGGCT ATGCCAATGT GCTGTCGCTG
ACGCTGTTCT CGGGCATTTC GGGCTCGGCC CTGGCCGATG CGGCCGGCCC CGGCTCGATG
ATGGTCAAGA TGATGGACAA GGCCGGCTAC GCGCGCTCCT ACGCGGCGGC GCTGACGGCC
AGCACGGCCA TCGTGGGGCC CATCATTCCG CCGTCGGTGA GCATGATCAT CTACGCGCTG
CAGGATGAGA ACGTGTCGGT GGGCGGGCTG TTCATGGCCG GCTTCATACC CGGCATCCTG
ATCGCGCTGG CCATGGCCGC CGTGAACTGG TGGGTGTGCA GGAAGCGCGA CTACCGCTCC
ACCGAGCCGC GCCCTGACGG CCGCACGATT TGGATCAACA GCTTCAAGGC GATTCCCGCG
CTGATGCTGA TCGTGCTCAT CGTGGTGGGC ATCCGCTTCG GCATCTTCAC GCCCACCGAG
GCGTCGGTGG TGGCCGTGTT CTACGCCCTG GTCTGCGGCA AGTGGGTGTA CCGCACGCTG
CAGTGGTCGG CGCTGCCGGG CATTGCGGCA CGCTCGGCCA TGCTGACGGC CTCGGTGCTG
CTGGTGATGG CGACTTCGGC CGCCTTTGCC TGGGTGCTGA CGGTGGAGGG CATTCCGCAG
TACCTGTCCG AGCTGATCGT GAGCTGGGAG CTGTCGCCCA CCCTGTTCCT GATCGCGGTG
AACATCCTGC TGCTGGTGTT CGGCATCTTC ATGGAGCCGC TGCCCGGCGT GATGATCCTG
GTGCCCATCC TGGCGCCCAT TGCGTTCAGC CTGGGCATCG ATCCCACGCA CTTCGCCATG
GTGGTGATCG TGAACCTGAC GCTGGGCATG ATCACGCCGC CCGTGGGCGG GCTGCTGTTC
GTGACCTCGG TGGCCACACG CGTGTCCATC ACCGATCTCA CACGCGAGAT GCCGCTGTTC
CTGCTGGCCC ACTTCGTGGT GCTGTGCCTG CTGACCTTCA TCCCCGCGCT GTCCACCTGG
TTGCCGCATA CGCTGGGCTT CCAGTGA
|
|---|
| Protein sequence | MGITLFIAIV VLLTLGFPVA FALAISAALA VFVGGRYPQL IVFKEMFTGI DSFPLMAVPF
FILAAELMSG GALTHVLLRF AAQFVGHLRG GLGYANVLSL TLFSGISGSA LADAAGPGSM
MVKMMDKAGY ARSYAAALTA STAIVGPIIP PSVSMIIYAL QDENVSVGGL FMAGFIPGIL
IALAMAAVNW WVCRKRDYRS TEPRPDGRTI WINSFKAIPA LMLIVLIVVG IRFGIFTPTE
ASVVAVFYAL VCGKWVYRTL QWSALPGIAA RSAMLTASVL LVMATSAAFA WVLTVEGIPQ
YLSELIVSWE LSPTLFLIAV NILLLVFGIF MEPLPGVMIL VPILAPIAFS LGIDPTHFAM
VVIVNLTLGM ITPPVGGLLF VTSVATRVSI TDLTREMPLF LLAHFVVLCL LTFIPALSTW
LPHTLGFQ
|
|---|
| |