Gene Daci_5771 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_5771 
Symbol 
ID5751392 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp6425362 
End bp6426183 
Gene Length822 bp 
Protein Length273 aa 
Translation table11 
GC content68% 
IMG OID641300903 
Productpolar amino acid ABC transporter, inner membrane subunit 
Protein accessionYP_001566784 
Protein GI160901202 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0765] ABC-type amino acid transport system, permease component 
TIGRFAM ID[TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.000135375 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCCAATG AAGCCACCCT GAACACCGGC GGCGCGCCCC GTCCGCTGCC CGCCGCCCTG 
CTGCGCGCGG CGCGCAGCCC CTGGCTGATC GCAGGCGCCG CACTGCTGGC CCTGTGCGCC
TGCTGGGCCG CCACGGACAG CGCCCCGCCT GCCTTCGTGC ACCTGTGGAA ATGGCTGCCC
GCGCTGCTGC GCGGCCTCCT GGTCAACATC GAGATCAGCG TGCTGGCCGT GGCCATCGGC
ACCGTGGCCG GCCTGGTGCT GGGCGCCCTG TCGCTGTCGC CCACGCCGGC CGTGCGCACG
GGCGTGCGCT GGTACGTGCA GCTGTTTCGC AATGCGCCCA TCCTGGTGCT CATCTACTTC
ACCACCTATG TGTTCCCGTT CGAGCTGAAG CTGGTGGGCT GGACCTTTCC GTTCCCCGAC
TGGGTCAAGG TGGTGCTGGG CCTGGCCCTG CCCACCAGCG CCAACGTGGC CGAGATCTTC
CGGGGCGCCA TCCAGTCCAT TCCCAGCGCG CAGTGGGAGG CGGCCCAGTC GCTGGCCTTT
CGCCGCAGCG AGATCTTCCG CCTCATCGTG CTGCCGCAGT GCGTGCGCCG CATGCTGCCG
CCGTGGATGA ACCTCTACGC CAGCATCACC ATGAGCACCT CGCTGGCCTC ACTGGTGGGC
GTGCACGACG TGGTAGACAC CGCCCAGATC GCCAGCAACA CCGTGGCACG CACGGACTTC
ACCATCCTTG TGTACTTCAC GCTGCTCGCG CTGTTTTTCG CCTATTGCTA TCCGATTGCC
CGCGCCACCC GCGCCCTGGA GCGACGCCAT GAAAATCACT GA
 
Protein sequence
MANEATLNTG GAPRPLPAAL LRAARSPWLI AGAALLALCA CWAATDSAPP AFVHLWKWLP 
ALLRGLLVNI EISVLAVAIG TVAGLVLGAL SLSPTPAVRT GVRWYVQLFR NAPILVLIYF
TTYVFPFELK LVGWTFPFPD WVKVVLGLAL PTSANVAEIF RGAIQSIPSA QWEAAQSLAF
RRSEIFRLIV LPQCVRRMLP PWMNLYASIT MSTSLASLVG VHDVVDTAQI ASNTVARTDF
TILVYFTLLA LFFAYCYPIA RATRALERRH ENH