| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5767 |
|---|
| Symbol | |
|---|
| ID | 5751388 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 6420984 |
|---|
| End bp | 6421802 |
|---|
| Gene Length | 819 bp |
|---|
| Protein Length | 272 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641300899 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001566780 |
|---|
| Protein GI | 160901198 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.000000244611 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCCGA CTCGCACCGC ACTGGCGGCC CTGCTCGCCC TCACGGCCCT GGCAGCCCAT
GCCGACGCCA CGCTGGACCG CATCAAGCAG CGCGGCAAGA TCGTGGTGGG GGTGATGCTT
TCGGGGCCGC CGTTCGGCAC CATCGACCCC GTCACGCAAA GGCACGTGGG CTACAACGTG
CAGCTGTCCG AAGGCGTGGC CAAGGGCCTG GGCGTGGGGG TGGAGACCGT GCAGGTCCAG
CCGTCCAACC GCGTGCAGTT CCTGCAGCAG GGCAAGGTGG ACATCCTGAT CGCCAACATG
CAGTGGACAC AGGAGCGCAG CGAGATCCTG TCCTTCGTGC CCACGCCGTT CGAGGAAGTC
GGCGGCGCCG CCATCGCCAA GAAGAGCAGC GGCGTGCGCC AGTGGGACGA CCTGCGCGGC
AAGCCCGTGT GCGTGTCGCA GGGCAGCAAT TTCACCAAGC CGCTGGCCGA TCAATACGGC
GCCCAGATCA AGGCCTTCCG GGGCCAGCCC GAGTCGCTGC TGGCCCTCAA GGGCGGCAAC
TGCGCGGCCG CCGTGCATGT CAGCCCCACA CTGCGCGAAC TCGTGGCCAG CAATGCGGAC
TGGAAGGACT ACGAGATCGT CTCGCCCGCC GACATCATTC CCTCGCCCTC GGTGATCTGG
CTGCGCAAGG GCGAGTCCGA CACGCAGGCG GCCATCGACC GCATCGTGCA GGACTGGCAC
CGCACGGGCT GGCTGATCGA GGTGGAGCAG CGCAACGGCA TGACGCCCAC GCCGCTGCTG
CACCAGCTGC ACGACAAGTT CAGGAAGGCG CCCGCATGA
|
|---|
| Protein sequence | MKPTRTALAA LLALTALAAH ADATLDRIKQ RGKIVVGVML SGPPFGTIDP VTQRHVGYNV
QLSEGVAKGL GVGVETVQVQ PSNRVQFLQQ GKVDILIANM QWTQERSEIL SFVPTPFEEV
GGAAIAKKSS GVRQWDDLRG KPVCVSQGSN FTKPLADQYG AQIKAFRGQP ESLLALKGGN
CAAAVHVSPT LRELVASNAD WKDYEIVSPA DIIPSPSVIW LRKGESDTQA AIDRIVQDWH
RTGWLIEVEQ RNGMTPTPLL HQLHDKFRKA PA
|
|---|
| |