Gene Daci_4761 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_4761 
Symbol 
ID5750353 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp5252942 
End bp5253466 
Gene Length525 bp 
Protein Length174 aa 
Translation table11 
GC content64% 
IMG OID641299866 
ProductECF subfamily RNA polymerase sigma-24 factor 
Protein accessionYP_001565775 
Protein GI160900193 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTCCTTGA ATCACACACA TTCTTCGCTG GAAGAGGTCT TCATTGCTTC GCGTGGACAG 
TTGGTGAGGG TCGCGCGAAG AATTCTCAGG AATCCCGAAC TGGCCGACGA CGCCGTGCAG
GACACCTATC TGCGCGTTGC CGAGATGCGC AGCGATGCCG AGATCGCCAA GCCCGCCGCC
TACTGGACGC GCGCCGTCTG CAACATGGCG CTGGACTACC TGCGCCGCCA GGAGCGCGAG
AACAGCTACC GCACCCACGG CGTGGATGTG GAGACGCTGG AGATACCGGA CAGCCGCTCG
CCCGAGCGCC TTTTGTTCGA GTCCCAGGCC ATACGCCTGA TCGACCAGGC CCTGGACGAG
GTGCCGCCCA AGACCCGCGA GACCTTCGAG CTGTACCGCA TCAAGGGCCT CACCCAGCGC
CAGATCGCCG AGCACATGGA GTGCGCGCTG GGCCTGGTGA ACGCCAGGAT TGCCGACGCC
TGCAGGGCCA TCCATGTCCA CCGCTCGCTG CTGGACCACC ATTGA
 
Protein sequence
MSLNHTHSSL EEVFIASRGQ LVRVARRILR NPELADDAVQ DTYLRVAEMR SDAEIAKPAA 
YWTRAVCNMA LDYLRRQERE NSYRTHGVDV ETLEIPDSRS PERLLFESQA IRLIDQALDE
VPPKTRETFE LYRIKGLTQR QIAEHMECAL GLVNARIADA CRAIHVHRSL LDHH