| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_4644 |
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| Symbol | |
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| ID | 5750234 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 5099944 |
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| End bp | 5101881 |
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| Gene Length | 1938 bp |
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| Protein Length | 645 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641299747 |
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| Product | tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC |
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| Protein accession | YP_001565658 |
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| Protein GI | 160900076 |
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| COG category | [E] Amino acid transport and metabolism
[S] Function unknown |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating)
[COG4121] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.683342 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0000257745 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGCCCATGT CCGAACCCAT TGACTGGCTG CCCGATGGCA CGCCCTACAG CCCGCGCTTC
GGCGACCGCT ACCACAGCGA ACTCGGCGGC CTGGACCAGG CCCGCCACGT CTTTCTGGGC
GGCTGCGGTC TGCCGGCGGC CTGGGCCGAT GCGCCGCAAT GGCGCATCCT GGAGACCGGT
TTCGGGTTCG GGCTGAATTT CCTCGTGGCC TGGGAAGCCT GGAAGGCCGA TCCCCGGCGC
CCGAGGCTGC TGCATTTCGT CTCGGCCGAA GCCTTTCCCG TCAGTGCCGA CGCCATGCGC
CAGGCCATGC CGCGCGAGCC AGGATTGCGC CTTCTGGCCG AAGAGCTGGC CACCCGGTTC
CAGGGCCTGC TGCCCGGCGT GCACCGCCTC GCCTTCGAGC AGGGGCGCGT GCTGCTGACG
CTGTACATCG GCGATGCCCA GGCCATGCTG CGGCGCCAGC AGATCACTGC CGACAGCATC
TACCTGGACG GCTTCACGCC GGAACTCAAC CCCGACCTCT GGAGCGCCGA CACCCTGCGC
GCGCTGGCGC GCCATTGCCG GCGCGGTACG CAGCTGTCCA CCTGGTGCGT GGCGCGCACG
GTGCGCGATG GCCTGGCCCA GCACGGCTTT CAGGTGCGCA AGGTCGATGG CGTCCCACCC
AAGCGCCACA ACCTGCATGC CGTCTTTGAC CCGGCCTGGC AACCGCGCGG GCCGCGTGCG
CAGCCGCAGG AAGCCATCAC CCCACGGCGC TGCATGGTGC TGGGTGCAGG CATCGCCGGT
GCGGCCGCTG CCGCCAGCCT GTCGCGCCGT GGCTGGCAGG TCACCGTGCT GGATACTGCC
GACGCGCCTG CAGCGGGCGC CTCGGCCCTG CCCGCGGGCC TGTTCTGCCC CCATGTCTCG
CCCGATGACA GCCTGCTGTC CCGCCTGAGC CGCGATGGCG CACGCCTGAC CCTGGCACAG
CTGCAAATGC TCTCCGGCCA GGGCCTGCTG CAACCGGGCA CGGACTGGTG CGATACCGGC
GTGCTGGAGC ATGGCGTGGA AGCCGCACCG CGGCTGCCGC GCGACTGGCA ATCCCCCGGC
CCGGGCGACC ACTGGAGCCG GCCCGCCAGC GCCGATCAAC TCTCGGCGGC CGGCCTGCCC
GCCGACGCCC CGGCCTGCTG GCATGTGCAG GCCGGCTGGG TGCGCCCGGC GCGGCTGGTG
CAGGCGCAGC TGGCACTGCC GGGCGTGCGC TGGCAGGGCC GCGCCTGCGT GGCGCGTCTT
GCACGCACCG ACACAGCCGG TGGCGCGCCC GTCTGGCAGG CCCTGGATGC ACAGGGCAAT
CTGCTGGCCG AGGCTGAACT GGTCGTTCTC GCACTGGGCC CGGCAACCAA TGCGCTGCTG
GAGCACAGCC TGGGTGCGCA GGCCGCCTGG CCGCTGCAGC CCATTCGCGG CCAGGTCAGC
TGGGATGTGC ACACCCCGGC CAGCGCACAG GCCATGCCGC CCTTTCCCGT CAACGGCCAT
GGCAACCTGG TGCCTGCCAT GCCGCTGCCT GGCGATGCGG CCGGGCCAGG CTGGGTCATG
GGATCGACCT TCGAGCGCGA CCAGACCGCG CTGCCGCCAA GTCCCGAAGA CCAGGCCGCA
GCCCATGCAG CCAATGGCGC CAAGCTGGCG CAGCTGCTGC CACGTGCCTA CCAGGGGCTG
CAAGGCTTCT TCGACGCGCC ACCGCGCGCC ACCTGGGGCG CCGTGCGCGT GGCCTCGCCA
GACCGGCTGC CCGTGGTCGG ACCGGTGTCC GATCAGGCTC CCGGCCTGTG GGCGCTGACG
GCCATGGGCT CGCGCGGGCT CACCCTGTCG CTGCTGTGCG GCGAGCTGCT GGCAGCACGC
CTGCACGACG AACCGCTGCC CCTGGACGCC AGGCTGGCGG CTGCCCTGGC CAGCGAGCGC
CTGGGCCGCA GGCGCTGA
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| Protein sequence | MPMSEPIDWL PDGTPYSPRF GDRYHSELGG LDQARHVFLG GCGLPAAWAD APQWRILETG
FGFGLNFLVA WEAWKADPRR PRLLHFVSAE AFPVSADAMR QAMPREPGLR LLAEELATRF
QGLLPGVHRL AFEQGRVLLT LYIGDAQAML RRQQITADSI YLDGFTPELN PDLWSADTLR
ALARHCRRGT QLSTWCVART VRDGLAQHGF QVRKVDGVPP KRHNLHAVFD PAWQPRGPRA
QPQEAITPRR CMVLGAGIAG AAAAASLSRR GWQVTVLDTA DAPAAGASAL PAGLFCPHVS
PDDSLLSRLS RDGARLTLAQ LQMLSGQGLL QPGTDWCDTG VLEHGVEAAP RLPRDWQSPG
PGDHWSRPAS ADQLSAAGLP ADAPACWHVQ AGWVRPARLV QAQLALPGVR WQGRACVARL
ARTDTAGGAP VWQALDAQGN LLAEAELVVL ALGPATNALL EHSLGAQAAW PLQPIRGQVS
WDVHTPASAQ AMPPFPVNGH GNLVPAMPLP GDAAGPGWVM GSTFERDQTA LPPSPEDQAA
AHAANGAKLA QLLPRAYQGL QGFFDAPPRA TWGAVRVASP DRLPVVGPVS DQAPGLWALT
AMGSRGLTLS LLCGELLAAR LHDEPLPLDA RLAAALASER LGRRR
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