Gene Daci_4215 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_4215 
Symbol 
ID5749803 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp4616589 
End bp4617152 
Gene Length564 bp 
Protein Length187 aa 
Translation table11 
GC content72% 
IMG OID641299318 
Productputative membrane-associated protein 
Protein accessionYP_001565231 
Protein GI160899649 
COG category[S] Function unknown 
COG ID[COG5612] Predicted integral membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.0405872 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGATGA ACGAATCCCC CATCGGCGAT GCCCCCCGCA CGACGCACCT GCGCCGCTGG 
CTGTGGGCCT CTGCCCTGCT GAATCTGTTT CTGGTGGGCG GCATTGCCGG TGGCACCTGG
CGCTGGTGGG CGCACCAGGC CGAGGCCAGG TCGGTAGCCA CGTCCACGCA GACAGGAACA
CCCACCGGAG CACCGGCGGG CAGCTCCCCG GCCACTGCGC GCGGACTGCG CTTTGCCGCA
GACGGCCTGC CGCCCGAGCG GCGCCAGGCT TTCCGCACAG GACTGCGTGA AGTGCGGCGC
GAGGCTGCTG CGCTGACCCA AGGCAGCCGC GAAGGCCGCG CCGAGGTGGT TCGCCTGCTG
GCTGCGCCGC AGTTCGACCG CGCTGCCGTC GAGGCTGCAT TGGCACGTAC CCGGGCCGCC
GACACGGCGG TGCGCGAGCG CGTGGAGGCG CACGTGGTCG ACTTCGCGGC CCAGCTCACG
CCGGCCGAGC GACAGACACT GGTGCAGGGG CTGGCAGCGC AGCAAGGCCC CTTCCATGTG
CCCGCATCTC CGGCCAGGCG CTGA
 
Protein sequence
MTMNESPIGD APRTTHLRRW LWASALLNLF LVGGIAGGTW RWWAHQAEAR SVATSTQTGT 
PTGAPAGSSP ATARGLRFAA DGLPPERRQA FRTGLREVRR EAAALTQGSR EGRAEVVRLL
AAPQFDRAAV EAALARTRAA DTAVRERVEA HVVDFAAQLT PAERQTLVQG LAAQQGPFHV
PASPARR