Gene Daci_4163 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_4163 
Symbol 
ID5749751 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp4555899 
End bp4557551 
Gene Length1653 bp 
Protein Length550 aa 
Translation table11 
GC content59% 
IMG OID641299266 
ProductUvrD/REP helicase 
Protein accessionYP_001565179 
Protein GI160899597 
COG category[L] Replication, recombination and repair 
COG ID[COG0210] Superfamily I DNA and RNA helicases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.533051 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.232274 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGTGGTC CAGGCTCCGG AAAGACGCAT GTCGCCCTGG TCAAAGCCAG GGACGAGATT 
CGATCAGCAA AGCTCCTATC AGGCCAGCGC ATCCTGTTTC TCAGCTTCGC GAGGCCCACA
GTGGCACGGG TCCTTGAGAA AGCCAAGGAA CTCATCACCG CGGATGATCT GAGACTTCTA
GATGTCAACA CCTATCACGG CTTCGCATGG AGCGTTCTGC GAAGTCATGG CTATCTGCTC
AGCAACGGAA AGCCGCTCCA GCTCCTACCA CCTCCCGAGG GCTCCGCGCG CTTGGCTCAC
TTTGCCAAGG AGCAGCATCA CCAGGAGAAG TTGCGCCTTT TCCATGAAGA GGGGCTGCTC
CACTTCGACC TCTTCGCCCA GTTGACGGCT GAACTGCTGC GCCGCAGCCG GCGGCTGGCA
GGTATCTACA CAGCGACCTA CCCGATACTC GTCGTGGACG AGTTCCAGGA CACGAACGCC
GACGAATGGG CGATGGTCCG CGAGCTTGGA CGCGGCTGCA GGATCATTGC CTTGGCCGAC
CCCGACCAGC GTATTTACGA ATTCCGCGGC GCCGATCCTC AGCGGCTCAA GGAATTCGTG
GACCAGTTCG ACCCCTTGCC AGTCGAGTTT GAAGGGGAGA ATCATCGCAG TGCCGGAACC
GACATCGCAA CGTACGGTTC AGACTTGCTC ACCGGGAAAA ACAAGGGCGC CGTCTATGCC
AATGTGTCGG TGGTCGAGTA CGGCGTGTAC TACGGAAGGG GTCCGCATTT CCATGCGAAG
GCCCAGCTCA TCCAGGCAAT CAAGCGACTT CGCAAGGAGC CGGCCTGGTC CATCGCAGTG
CTCGTCCCAT CCAAGGCCTT CATGCTTCAA GTGTCCGACT ACCTCTCCGC GGAGTCCGAT
GGCATGCCCA ACCTTCGCCA CGAGGTGGCG ATGGACGCGG AATCCCCGGC GCTTGCGGCA
AACGTCATCG CCACGCTAAT GGAAGGAGGC CCTTCGGAGC TTCTGGCTGC GCGGCTACTC
TCCGCCTTAC ATACCCACAT CCGGGGCCGC AGTGGCACCA AACGCCCTGC GCAGGCGGAA
CTCGACATGG CCGACGCCAT CGACCAATAC TTGGTCTCCG GAAAGATCCG CGGCAAGAAT
CGCCAAGCGT TGATCAGCGA GTGCGCGCGC CTAGCAGCGC TTCGCCAGGA CGTCGTATTC
ACCGGCCATC CTGAAGAAGA CTGGTTGACT GCGCGGGGGC TTCTCGCGAC GTCTGCCGTT
GGCCAACTGT CGCGCGTTGC CGCTGATGCC AAGTATCTCC GCCTGCTTCA CAAGGGCTCA
AACCTGCGGG CGTCTTTGTC AGAGCTTTGG AGATCCCAAG GACAGTATGT CGGCGCTATC
GAAGCTGTCC GGGGCGCTTT GCTGCAGGAG CATTTCACAG CAGCCGCCAA GGAATGGCGT
GGAGTTCATC TCATGACCAT TCACAAAGCA AAGGGTAAGG AGTTTGACGA GGTACTGATT
TACGAAGGGC GATATGCTGG ACGAATTGTG CCTGCGAATG CAGATACTTC TCGTCAAAGC
CAAGCCCTTT TGGCACTGCG GGTCGCAGTC ACAAGAGCTA TGAAGAGAGC AACAATCCTG
ACGCCATCGG GAGACCGCAG CATTTTTTTG TAA
 
Protein sequence
MGGPGSGKTH VALVKARDEI RSAKLLSGQR ILFLSFARPT VARVLEKAKE LITADDLRLL 
DVNTYHGFAW SVLRSHGYLL SNGKPLQLLP PPEGSARLAH FAKEQHHQEK LRLFHEEGLL
HFDLFAQLTA ELLRRSRRLA GIYTATYPIL VVDEFQDTNA DEWAMVRELG RGCRIIALAD
PDQRIYEFRG ADPQRLKEFV DQFDPLPVEF EGENHRSAGT DIATYGSDLL TGKNKGAVYA
NVSVVEYGVY YGRGPHFHAK AQLIQAIKRL RKEPAWSIAV LVPSKAFMLQ VSDYLSAESD
GMPNLRHEVA MDAESPALAA NVIATLMEGG PSELLAARLL SALHTHIRGR SGTKRPAQAE
LDMADAIDQY LVSGKIRGKN RQALISECAR LAALRQDVVF TGHPEEDWLT ARGLLATSAV
GQLSRVAADA KYLRLLHKGS NLRASLSELW RSQGQYVGAI EAVRGALLQE HFTAAAKEWR
GVHLMTIHKA KGKEFDEVLI YEGRYAGRIV PANADTSRQS QALLALRVAV TRAMKRATIL
TPSGDRSIFL