| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3978 |
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| Symbol | |
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| ID | 5749561 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 4378623 |
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| End bp | 4380467 |
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| Gene Length | 1845 bp |
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| Protein Length | 614 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641299076 |
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| Product | dihydrolipoamide dehydrogenase |
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| Protein accession | YP_001564994 |
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| Protein GI | 160899412 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0508] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes
[COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes |
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| TIGRFAM ID | [TIGR01350] dihydrolipoamide dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.198165 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.00908444 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGCAATCA TCGACATCAA GGTGCCCGAC ATCGGCGACT TCGCCGAAGT GGGCGTGATC
GAACTGCTGG TCCAGCCCGG TGACACCGTG GCCAAGGACC AGTCCCTGAT CACCGTGGAG
TCCGACAAGG CCTCCATGGA GATCCCCTCC AGCCATGCCG GCGTGGTCAA GGAACTCAAG
GTCAAGATCG GCGACAAGAT CGCCGAAGGC GGCCTGATCC TGACGCTGGA GGCCGCTGGC
GAAGCGGCCG CCGCACCCCA GGCGGCCGCA CCGGCCCCTG CAGCGGCGGC TCCAGCGCCT
GCCGCTGCAG CGCCCGCAGC ATCGGCTCCC GCTCCGATCG CAGCCAGCTA CGCCGGTGGC
GCGGCCGACT ACGACTGCGA CGTGGTCGTG CTCGGCGGCG GTCCTGGCGG CTACTCGGCA
GCCTTCCGTG CGGCCGATCT GGGCCTGAAT GTGGTCCTCG TCGAGCGCTA CAAGAGCCTG
GGCGGCGTCT GCCTGAACGT GGGCTGCATC CCGTCCAAGG CGCTGCTGCA CGTGGCCGCC
GTGGTGGACG AGGTCAAGCA CCTGGAGGTG GCCGGCGTCA AGTTCGGCGC GCCCGAGGTC
AACATCGACC AGCTGCGCGG ACACAAGGAC AAGGTCATCG GCAAGCTGAC CGGCGGCCTG
GGCCAGATGG CCAAGATGCG CAAGGTCACC GTGGTGCGCG GCTACGGCAA CTTCGTCGGT
GCCAACCACC TTGAGGTGGA AGAGACCACG GGCGACGGCC AGGAAAAGAC CGGCAGCAAG
AAGATCGTGC AGTTCAAGCG CGCCATCATT GCCGCCGGCA GCCAGGCCGT GCACCTGCCC
TTCATGCCCA AGGACCCGCG CGTGGTGGAC TCCACCGGCG CGCTGGACCT GGCCAGCGTG
CCCAAGCGCA TGCTGATCCT GGGCGGCGGC ATCATCGGCC TGGAAATGGG CACCGTCTAC
TCCACGCTGG GCGCACGCCT GGACGTGGTG GAGATGATGG ACGGCCTCAT GCAGGGCGCC
GACCGCGACC TGGTCAAGGT CTGGCAGAAG ATGAACGCGC CGCGCTTCGA CAACATCATG
GTCAACACCA AGACCGTGGG TGCCGAAGCC ACGCCCGAAG GCATCAAGGT CAGCTTTGCG
CCTGCCAAGG ACGGCATCAC CGTGCCCGAG CCCCAGGTCT ACGACCTGGT GCTGCAGGCC
GTGGGCCGCA CGCCCAACGG CAAGAAGATC GCTGCCGAGA AGGCCGGCGT GGCCGTCACG
GACCGCGGCT TCATCGAAGT CGATATCCAG ATGCGCACCA ATGTGCCCCA CATCTTCGCC
ATCGGCGACG TGGTGGGCCA GCCCATGCTG GCGCACAAGG CTGTGCACGA GGCCCATGTG
GCCGCCGAAG TCATCGCCGG TGAACTGCAG GGCAACAAGG AGCTGGCTGC CAGCGCCTTC
AACGCCCGCG TGATCCCCAG CGTGGCCTAC ACCGACCCGG AAGTGGCGTG GGTGGGCCTG
ACCGAGGACC AGGCCAAGGC CCAGGGCATC AAGGTCAAGA AGGGTGTCTT CCCCTGGACG
GCTTCGGGCC GCGCCATTGC CAATGGCCGC GACGAAGGCG TCACCAAGCT GCTGTTCGAT
GACAGCCCCG AGGCGCACGG CCATGGCCGC ATCCTGGGTG GCGGCATCGT CGGCACGCAT
GCGGGCGACA TGATCGGCGA GATTGCGCTG GCCATCGAAA TGGGTGCCGA CGCTGTGGAC
ATCGGCAAGA CCATCCACCC CCACCCCACG CTGGGCGAAA GCCTGGGCAT GGCGGCCGAG
GTGGCGCACG GCTCCTGCAC GGACCTGCCG CCGCAGCGCA AGTAA
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| Protein sequence | MAIIDIKVPD IGDFAEVGVI ELLVQPGDTV AKDQSLITVE SDKASMEIPS SHAGVVKELK
VKIGDKIAEG GLILTLEAAG EAAAAPQAAA PAPAAAAPAP AAAAPAASAP APIAASYAGG
AADYDCDVVV LGGGPGGYSA AFRAADLGLN VVLVERYKSL GGVCLNVGCI PSKALLHVAA
VVDEVKHLEV AGVKFGAPEV NIDQLRGHKD KVIGKLTGGL GQMAKMRKVT VVRGYGNFVG
ANHLEVEETT GDGQEKTGSK KIVQFKRAII AAGSQAVHLP FMPKDPRVVD STGALDLASV
PKRMLILGGG IIGLEMGTVY STLGARLDVV EMMDGLMQGA DRDLVKVWQK MNAPRFDNIM
VNTKTVGAEA TPEGIKVSFA PAKDGITVPE PQVYDLVLQA VGRTPNGKKI AAEKAGVAVT
DRGFIEVDIQ MRTNVPHIFA IGDVVGQPML AHKAVHEAHV AAEVIAGELQ GNKELAASAF
NARVIPSVAY TDPEVAWVGL TEDQAKAQGI KVKKGVFPWT ASGRAIANGR DEGVTKLLFD
DSPEAHGHGR ILGGGIVGTH AGDMIGEIAL AIEMGADAVD IGKTIHPHPT LGESLGMAAE
VAHGSCTDLP PQRK
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