| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3948 |
|---|
| Symbol | |
|---|
| ID | 5749531 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 4347646 |
|---|
| End bp | 4349838 |
|---|
| Gene Length | 2193 bp |
|---|
| Protein Length | 730 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641299046 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_001564964 |
|---|
| Protein GI | 160899382 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.32851 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAGTGA CAACAAAGCA ATACCACCAG GACGCCAAGG CGCAGGGGGA GAGGACGAAA
CTGCGCCCGC TGCTGCAGCA ACTGCTGCTG GCAGGCGTGC TGGGCCCGGC GACGGGCGGC
CTGGCCATGG CGGCAGAGCC TGCCGACCCC GTACCCTCTG CAGGACCCGC AGCCGCAGCT
AACGCTGGGG CGGGCGCGCC GCGCAGTGAT GCCCCCGTGC TCAATGAGGT GACGGTCAAG
GCCAGCGGCC TGGGCCTGAC CTCGGCCGAC ATGTCCACGC CGGCCACGGT GCTGGAAGGC
GACGTGCTCA CGCTGCGCCA GGCCGCCACG CTGGGCGAGA CGCTGGACGG CGAGCCCGGC
ATCCATGCCA GCCATTTCGG CGCAGGCGCA AGCCGGCCCA TCATCCGCGG CATGGACGGC
CCGCGCGTGC AAATCCTCAG CGATGGCTCC GAGCTGCACG ATGCCTCCAC CATCAGCCCT
GACCATGCCG TGGCCAGCGA GCCCATGCTG GCCACGCAGA TCGAGGTGCT GCGCGGCCCC
TCTGCGCTGA TCTACGGCGG CGGTGGCGCC ATGGGCGGCG TGGTCAACAT TCTGGACGAC
AAGATTCCCA CGTCCATTCC CAGGAACGGC ATCACGGGCT CGGCCCAGCT GCGCGGCAGC
ACGGGCGCGG GCGAGACGGC GGGCGCTTTC TCGCTGACGG GCGGCGCCGG CCAGCTGGCC
ATCCACGCCG AGGGCATGGC GCGCGATGCC GGCGACTACC GCGTGGGCAG CGGCTGGGCG
CCCAACGGCC AGTCCCAGGG GCGCGTGGCG GGCAGCTTCA ACCGCACGGA CACGGGCAGC
CTGGGCCTGT CCTGGATCGG CACGCAAGGC TACCTGGGCC TGGCCTACAC GCGCCAGACC
GCGCGCTATG GCCTGCCGGG CCACAACCAC AGCTTCGAGG GCTGCCACAC CCATGGCGAC
CATCTGCACT GCGGCGGACA TGACCACGGC GACGAGGATG GACATGACCA CGGCGGCGAT
GACCACGACC ATGGCAGCGT GCCGGTGGTC GATCTCACCA GCGAGCGCTG GGATCTGCGC
GGCGAATGGC GCAATCCGAC GGCTGGCATC GCGGCGCTGC GCGTGCGCGG TGGCTGGACC
GACTATCGCC ATGATGAGAT CGAAGGCGGC CAGGTCTCGA CCACGTTCAA GAACCGCGCC
CATGACCTGC GCGTGGAGGC AGACCTGGAG CCCATCGCCG GCTGGCGCGG CGTCATCGGC
CTGCAGACCG TGCAGCGCAA GTTCAGCGCC GAGGGTGAGG AGGCCTATGT GCAGCCCACC
GAAACCCGCC GCAACAGCAT CTACCTGCTG GAGGAATACC GCTGGCAGGA CTGGCGCTGG
CAGGCTGCGC TGCGCCACGA GCGCCAGACC GTGGACGCCC AGCAAAGCGG CATCTCGCGC
AGCCACAGCG GCACATCGTT CTCGCTGGGC TCGGTGTGGA AGTTCACCCC GGGCTACAGC
CTCTCGGCTT CGCTGACGCA GGGCAACCGC CTGCCCACGG CCGAGGAGCT GTACGCCAAC
GGCCTGCACA TGGCGACTTC CACCTACGAG CGCGGCAATG CCGACCTCAA GCGCGAACGC
TCGCAGGCGC TGGACATCGG CCTGCGCAAG ACGGCAGGCG ACACCACGTT CAGCGTCAAT
GCCTTCCACC ATCGCGTCAA GGGCTACATC TACGGCGCCA CGCTGGACGA GCATGACGGC
CTGCAACTGC TGCAGTACAC CCAGGCCGAT GCGCGCTTCA CCGGCGTGGA GGGCCAGGTG
CGCCAGAAGC TGTCGCGCCA GTGGGGCGTG ACCCTGTTCG GTGACGCCGT GCGTGCGCGG
CTGGAAGACG GCTCCGCCTT GCCGCGCATC CCCGCGGCGC GCGTGGGCCT GCGCGTGGAC
ACCTTCTACA AGGGCTGGGA TGCCCAGGCC GAATGGGTGC AGGTGCTGCG CCAGAACCGT
GTCACCGCCT ATGAGACCGA GACGGACGGC TACGGCATGC TCAACGTCTC TGCCAGCTAC
ACGCTGCGCA CCTCGGGTGG CATGCCCTGG CAGTTCTTCA TCAAGGGCAA CAACCTGACC
AACCGCCTGG CCTTCGCCCA CACATCGTTC ATCAAGAACG CTGCGCCGCT GATGGGGCGC
AACATCACGG TGGGCGTCAA GGTGTCGTTC TAA
|
|---|
| Protein sequence | MRVTTKQYHQ DAKAQGERTK LRPLLQQLLL AGVLGPATGG LAMAAEPADP VPSAGPAAAA
NAGAGAPRSD APVLNEVTVK ASGLGLTSAD MSTPATVLEG DVLTLRQAAT LGETLDGEPG
IHASHFGAGA SRPIIRGMDG PRVQILSDGS ELHDASTISP DHAVASEPML ATQIEVLRGP
SALIYGGGGA MGGVVNILDD KIPTSIPRNG ITGSAQLRGS TGAGETAGAF SLTGGAGQLA
IHAEGMARDA GDYRVGSGWA PNGQSQGRVA GSFNRTDTGS LGLSWIGTQG YLGLAYTRQT
ARYGLPGHNH SFEGCHTHGD HLHCGGHDHG DEDGHDHGGD DHDHGSVPVV DLTSERWDLR
GEWRNPTAGI AALRVRGGWT DYRHDEIEGG QVSTTFKNRA HDLRVEADLE PIAGWRGVIG
LQTVQRKFSA EGEEAYVQPT ETRRNSIYLL EEYRWQDWRW QAALRHERQT VDAQQSGISR
SHSGTSFSLG SVWKFTPGYS LSASLTQGNR LPTAEELYAN GLHMATSTYE RGNADLKRER
SQALDIGLRK TAGDTTFSVN AFHHRVKGYI YGATLDEHDG LQLLQYTQAD ARFTGVEGQV
RQKLSRQWGV TLFGDAVRAR LEDGSALPRI PAARVGLRVD TFYKGWDAQA EWVQVLRQNR
VTAYETETDG YGMLNVSASY TLRTSGGMPW QFFIKGNNLT NRLAFAHTSF IKNAAPLMGR
NITVGVKVSF
|
|---|
| |