| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3815 |
|---|
| Symbol | |
|---|
| ID | 5749398 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 4195325 |
|---|
| End bp | 4196665 |
|---|
| Gene Length | 1341 bp |
|---|
| Protein Length | 446 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641298913 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001564831 |
|---|
| Protein GI | 160899249 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00895] benzoate transport |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.203479 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGATA TCCGCAAGAC GATGGACGAG GGCGCCATGG CGCCGTTCCA GTGGCTGGCC
GTGGCCATCT GCACCCTGCT CATCATGCTG GACGGCTTCG ATGTGCTGGT GATGGCCTTC
ACCGCCTCGG CCGTCGCTGC CGAATGGAAG CTCAACGGGG CCCAGCTGGG CGTGCTGTTC
AGCGCCGGTC TGATCGGCAT GGCCCTGGGC TCGCTGTTCC TGGCGCCCGT GGCCGACCGC
CGTGGCCGGC AACCCATCAT CGTCCTGTGC CTGGTGCTGG TGTCCGTGGG CATGCTGCTG
TCTGCGGCAG CGCGCAGCCA TGTCGAGCTG GCAGCCCTGC GCGCCATGAC GGGCGTGGGC
ATTGGCGGCA TGCTGGCCAG CGTGGGGGTG ATCACCTCTG AGTATTCATC GAACAAATGG
CGCAGCACGG CGATTGCGCT GCAGGCCACG GGCTATCCGA TTGGCGCCAC GCTGGGCGGA
CTCATGGCCG CCTGGCTGCT GACACACCAT GGTTGGCGCT CGGTCTTTGT GTTCGGCGGC
CTGGCCACGG CGCTGATGGT GCCCATCGTG CTGTGGCGCC TGCCGGAGTC GGTGGATTTC
CTGATGGGCC GTCGCCCGGC GCGTGCGCTG GAAAAGCTCA ACCGCCTGAT GGCACTCATG
GGGCACCCCG CCATGCTGCA GCTGCCCGCG CAAGCCGGCC GTGACGTCCA GCAGGGCAAT
ACCGTGGCCG CCTTGTTCAG GAACGGCCTG GCGCGCCCCA CGCTCATGCT CTGGGCCGGC
TTCTTCCTGC TGATGTTCAG CGTCTACTTT TCCCTGAGCT GGACGCCCAA GCTGCTGGTG
CAGGCGGGCC TGTCGGCGCA GCAGGGCGTG ACGGGCGGCG TGCTGCTCAA CCTGGGCGGC
ATTGCCGGCG GCAGCCTGTT CGGCCTGCTG GCGGTGAAGG CCAAGCTGCG GCATCTGGCC
ATGGGCAGCC TGCTGCTGAA TGCCTTGTTC ACCGCGCTGT TCGGCCTGGC CTCGGCCAGC
CTGGGCTGGG CGTTCGCCGC AGCGGTGGGC GTGGGCGTGT TCCTGTTCGC CTCCATGGCC
GGGCTGTACG GGTTGGTGCC GGCCACCTAT CCGGCCCAGG TGCGCGCCAC CGGCATGGGC
TGGGCCATAG GCATTGGGCG CATAGGCGCC ATCGTGGCGC CCACCATGGC CGGCCTGCTG
CTGGACGGCG GTTGGCAGCC CGCCTCGCTG TACTACGTCT TTGCCTTGCC GCTGATTGCC
GCTGCGCTGG CCGTGTGGGC CACGGGCGCC GGCCGCACCC TGGCGCCGGG GGGTGGCGCG
CTGCGAGCGC CTGGTGCTTG A
|
|---|
| Protein sequence | MKDIRKTMDE GAMAPFQWLA VAICTLLIML DGFDVLVMAF TASAVAAEWK LNGAQLGVLF
SAGLIGMALG SLFLAPVADR RGRQPIIVLC LVLVSVGMLL SAAARSHVEL AALRAMTGVG
IGGMLASVGV ITSEYSSNKW RSTAIALQAT GYPIGATLGG LMAAWLLTHH GWRSVFVFGG
LATALMVPIV LWRLPESVDF LMGRRPARAL EKLNRLMALM GHPAMLQLPA QAGRDVQQGN
TVAALFRNGL ARPTLMLWAG FFLLMFSVYF SLSWTPKLLV QAGLSAQQGV TGGVLLNLGG
IAGGSLFGLL AVKAKLRHLA MGSLLLNALF TALFGLASAS LGWAFAAAVG VGVFLFASMA
GLYGLVPATY PAQVRATGMG WAIGIGRIGA IVAPTMAGLL LDGGWQPASL YYVFALPLIA
AALAVWATGA GRTLAPGGGA LRAPGA
|
|---|
| |