| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3485 |
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| Symbol | |
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| ID | 5749070 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 3820762 |
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| End bp | 3822693 |
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| Gene Length | 1932 bp |
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| Protein Length | 643 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641298588 |
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| Product | selenocysteine-specific translation elongation factor |
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| Protein accession | YP_001564506 |
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| Protein GI | 160898924 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG3276] Selenocysteine-specific translation elongation factor |
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| TIGRFAM ID | [TIGR00475] selenocysteine-specific elongation factor SelB
[TIGR00485] translation elongation factor TU |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.035122 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCATCG GCACCGCCGG CCACATTGAC CACGGCAAGA CCACCCTGGT GCGCGCGCTC
ACGGGCGTGG ACACCGACCG CCTCAAGGAA GAGAAGGCGC GCGGCATCTC CATCGAGCTG
GGCTATGCCT ACACGCCGCT GCCCAATGGC GAGGTGCTGG GCATCATCGA CGTGCCCGGC
CACGAAAAAT TCGTGCACAC CATGGCCGCA GGCGCCGTGG GCATAGACCA CGCCTTGCTG
GTGGTGGCCG CCGACGACGG CGTCATGCCG CAGACGCGCG AGCACCTGGA CATCCTGCAG
CTGCTGGGCG TGCGCGAAGC CACCGTGGCC CTGACCAAGG CCGACCGCGC CACGCCCGAG
CGGCTGCAGC AGGTGCGCGC CGAGATCGGG GCCCTGCTAG CCCCCACGCC GCTGGCCGGC
GCGCCGGTCT TCCCTACCGC GGCAGCCCTG CCTGACGACG CAGGCGTGGC GCAGTTGCGC
GAGCACCTCA TGGCGCGCGC CCAGTCCATT CCCGCGCGGG CCAGCGACGG GCTGTTCCGC
CTGGCCGTGG ACCGCAGCTT CACGCTACCG GGCCAGGGCA CCGTGGTCAC AGGCACCGTG
TTCGGCGGGC AGGTGAAAGT CGGCGACACG CTGGTGCACT CGGCCTCGGG CACCGAGGTG
CGCGTGCGCA GCCTGCATGC CCAGAACCAG GCCAGCGAAC AGGGCCTGGC CGGACAGCGC
TGCGCGCTCA ACCTGTCGGG CATTGCCAAG GAAGCCATCA CGCGCGGCGA CTGGATCGCC
GACGCACGGC TGCTGCAGGC CAGCGACCGG ATCGACGTGC GCCTGCAACT GCTGGCCGAT
GCGCCATCAC TGGCCCAATG GTCGCCTGTG CATGTGCACA TCGGTACGGC GCGCTGCACG
GCCCACGTGG CCCTGCTGCA GGACCAGCCG CTGAGCCCTG GCGAACAGGC CATCGTCCAG
CTGGTGCTGG ACATGCCCGT ACATGCCCAA CCCGGCGACC GGCTCATCGT GCGCAATGCC
CAGGCCAGCC GCACCATTGC CGGCGGCAGC GTCATCGACC CCTTTGCACC CGCACGCAAG
CGCCGCAGCC CCGAGCGCAC GGCCTATCTG CAGGCGCTGG AATCGCTGAT TGCCACCGGG
GATGCCAGCG CACTGGTGCA AGGCGCGGCG CACGGCATTG CCACGTCGCA GCTCATGCGC
CTGACGGGCC GCGCATCGGT GGCCACGGAT GCCCGCCTGC ACCGCCTCCC CTTGGCGGAG
GGCGATACGC TGCTGCTGGG CGAGGCACGC TTGCAGCAGC TGCGCAACCA GGTGCTGGAC
AGCATGGCGC GCTTCCACGA CAAAAGCCCC GACGAGCCCG GCGTGAACGC CGCACGCCTG
CGCCGCATGG CACTGTCGGG CCTGGTGCAT GCAGGGCATG ACGCGCTGTG GAAGGGATTG
CTGCAAGCCC TGCTGCAGGA CGGCAGCCTG GCCGCCAGCG GCGCCTGGCT GCACCTGCCC
GGCCACAGCG TGCAGCTGTC GGACAGTGAA AAGCAGATCG CACAGAAACT GCTGCCCGCC
ATCGAGGCCG GCCGCTACGA CCCGCCCTGG GTGCGCGACC TGGCCCGCGA CAGCGCCACC
GGCGAGGAAA CCGTGCGCCA GCTGCTGCGC AAGCTCGCAC GCCAGGGCCA ATTGTTCCAA
GTCACCAAGG ACCTGTTCTA CACAGCAGCC CGCATGGACG AACTCGCGGC CCTGGTCCGC
GAGCTGGCCT CCTCCACCCC CAACGCCGAA ATCCAGGCCC ACGCCTTCCG CGACGCCACC
GGCCTGGGCC GCAAGCGCGC CATCCAGATC CTCGAATTCT TCGACCGCAT CGGCTACACC
CGCCGCCTGC GCGACGCCCA CCTGCTGCGC CCCGATGTGC AGTGGACCAC TGGTGCCACA
GCAAGAATCT GA
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| Protein sequence | MIIGTAGHID HGKTTLVRAL TGVDTDRLKE EKARGISIEL GYAYTPLPNG EVLGIIDVPG
HEKFVHTMAA GAVGIDHALL VVAADDGVMP QTREHLDILQ LLGVREATVA LTKADRATPE
RLQQVRAEIG ALLAPTPLAG APVFPTAAAL PDDAGVAQLR EHLMARAQSI PARASDGLFR
LAVDRSFTLP GQGTVVTGTV FGGQVKVGDT LVHSASGTEV RVRSLHAQNQ ASEQGLAGQR
CALNLSGIAK EAITRGDWIA DARLLQASDR IDVRLQLLAD APSLAQWSPV HVHIGTARCT
AHVALLQDQP LSPGEQAIVQ LVLDMPVHAQ PGDRLIVRNA QASRTIAGGS VIDPFAPARK
RRSPERTAYL QALESLIATG DASALVQGAA HGIATSQLMR LTGRASVATD ARLHRLPLAE
GDTLLLGEAR LQQLRNQVLD SMARFHDKSP DEPGVNAARL RRMALSGLVH AGHDALWKGL
LQALLQDGSL AASGAWLHLP GHSVQLSDSE KQIAQKLLPA IEAGRYDPPW VRDLARDSAT
GEETVRQLLR KLARQGQLFQ VTKDLFYTAA RMDELAALVR ELASSTPNAE IQAHAFRDAT
GLGRKRAIQI LEFFDRIGYT RRLRDAHLLR PDVQWTTGAT ARI
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