| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3143 |
|---|
| Symbol | |
|---|
| ID | 5748727 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 3458558 |
|---|
| End bp | 3459490 |
|---|
| Gene Length | 933 bp |
|---|
| Protein Length | 310 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641298246 |
|---|
| Product | intradiol ring-cleavage dioxygenase |
|---|
| Protein accession | YP_001564166 |
|---|
| Protein GI | 160898584 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3485] Protocatechuate 3,4-dioxygenase beta subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.529872 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.00328294 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAACCACT CTCACGATGC CCATGATCTT GCCCACGACC TGGGCCTTCA GCACGATCTG
CAAGTCATGG CGCGCCGCCT GTTCGAGCGC CGCCGCATTC TGGGCCTGAT GGCCTCTGGC
GGCGCTGCAG CGCTTCTGTC CGCCTGTGGC GGCGGTGGTG ATTCCAGTGA TTCGACAGGA
ACTGGCACGG GCACCGGAAC CGGGACAGGA ACGGGCACCG ACACGGGTAC GGGCACAGGT
ACGGGCACGG GGGCTGGAAC CACGACCGGC ACCTGCATGG TCGATCCCAC GGAAACCGAG
GGCCCTTACC CCGCCGACGG CTCCAACGGC TCGCGCGGCA GCCTGGTCAA CGTGCTGTCG
CAAAGCGGCG TGGTGCGCAG CGACCTGCGC AGCAGCTTTG GCGGCATGAG CGGCATGGCT
GCGGGCCTGC CGCTGACGCT CAAGATCACC CTGGTCAACG TCAGCACCAA CTGCAGCCCG
CTGGAAGGCT ATGCCATCTA CCTGTGGCAT TGCACCCGCG AGGGCGAGTA TTCGCTGTAC
TCCACCGACC TGCTCAACCA GAACTTCCTG CGCGGCGTGC AGGCGACGGA CAGCAATGGC
GAATGCACCT TTGTGACCAT CTTCCCGGGC TGCTATGACG GGCGCTGGCC GCACATGCAC
TTCGAGGTGT TCCGCAGCCT CAACACGGCC GGCAGCTACA CCAACAAGCT GCTGACCTCG
CAGATGGCCA TGCCCAAGGA CGTGGCCAGC GCCGTCTATG CCGGTGTCAG CGGCTACAGC
GCCAGCGTCT CCAACCTGTC GCGGGTCAGC GTGACATCGG ACAATGTCTT CGGCGACAAC
ACCAGCGAGC AGATCGCCTG GCAGACGCCC ACCTTCACCG GAGACACCAC CAATGGCCAC
ACCGCCACGA TATCCATCGG CATTGCCGTC TGA
|
|---|
| Protein sequence | MNHSHDAHDL AHDLGLQHDL QVMARRLFER RRILGLMASG GAAALLSACG GGGDSSDSTG
TGTGTGTGTG TGTDTGTGTG TGTGAGTTTG TCMVDPTETE GPYPADGSNG SRGSLVNVLS
QSGVVRSDLR SSFGGMSGMA AGLPLTLKIT LVNVSTNCSP LEGYAIYLWH CTREGEYSLY
STDLLNQNFL RGVQATDSNG ECTFVTIFPG CYDGRWPHMH FEVFRSLNTA GSYTNKLLTS
QMAMPKDVAS AVYAGVSGYS ASVSNLSRVS VTSDNVFGDN TSEQIAWQTP TFTGDTTNGH
TATISIGIAV
|
|---|
| |