| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_2118 |
|---|
| Symbol | |
|---|
| ID | 5747680 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 2325404 |
|---|
| End bp | 2326204 |
|---|
| Gene Length | 801 bp |
|---|
| Protein Length | 266 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641297201 |
|---|
| Product | hydroxypyruvate isomerase |
|---|
| Protein accession | YP_001563143 |
|---|
| Protein GI | 160897561 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3622] Hydroxypyruvate isomerase |
|---|
| TIGRFAM ID | [TIGR03234] hydroxypyruvate isomerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.0266277 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCGTT TTGCTGCCAA CCTCAGCATG CTGTTCACCG AGGTGCCCTT CCTCGACCGC
TTCGAGCGCG CGGCGCGCGC CGGCTTCGAG GCCGTGGAAT TCCTGTTTCC CTACGCCCAT
ACGGTCGAAG AGATCAAGGA GCGCGTGGAC GCCCACGGCC TGCAGATCGT GCTGCACAAC
CTGCCGGCCG GCGACTGGGA TGCGGGCGAG CGCGGCATTG CCTGCCACCC CGACCGCGTG
GACGAGTTCC GCGCCGGCGT GGCCAAGGCC GTGACCTATG GCCATGCGCT GGGCGTGCCC
CAGCTCAACT GCCTGGCCGG CAAGGCGCCT GCCGGTGCCG ATGCCGCGCT GCTGCGCCGC
ACCTTCGTGG ACAACCTGCG CTTTGCCGCA TCGGCGCTGA GCGCGGCCAA TCTGCGCCTG
CTGATCGAGC CCATCAACCC CTTCGACATT CCCGGCTTCT ACCTGAACCG CACGGACGAG
GCCCTGTCCA TCCTCGACGA GGTGGGCGCG CCCAACGCCT TCGTGCAGTA CGACATCTAC
CACGCGCAGC GCACCGAGGG CGAACTGGCG GCCACGCTGC AAAAGCACCT GGCGCGCATC
GGCCATGTGC AGCTGGCCGA CAACCCGGGC CGCAACGAGC CGGGCACGGG CGAGATCAAC
TACCCCTTCC TGTTCGCGCA CCTGGACCGC ATCGGCTACC AGGGCTGGGT GGGCTGCGAG
TACAAGCCCG CGCGCGATAC CGAATCGGGC CTGGGCTGGC TGGACGCCCA CACCAGCGTG
CGCGCGGCAG TCGCCGCCTG A
|
|---|
| Protein sequence | MPRFAANLSM LFTEVPFLDR FERAARAGFE AVEFLFPYAH TVEEIKERVD AHGLQIVLHN
LPAGDWDAGE RGIACHPDRV DEFRAGVAKA VTYGHALGVP QLNCLAGKAP AGADAALLRR
TFVDNLRFAA SALSAANLRL LIEPINPFDI PGFYLNRTDE ALSILDEVGA PNAFVQYDIY
HAQRTEGELA ATLQKHLARI GHVQLADNPG RNEPGTGEIN YPFLFAHLDR IGYQGWVGCE
YKPARDTESG LGWLDAHTSV RAAVAA
|
|---|
| |